Pairwise Alignments

Query, 873 a.a., Chaperone protein ClpB (ATP-dependent unfoldase) from Variovorax sp. SCN45

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  494 bits (1273), Expect = e-144
 Identities = 319/861 (37%), Positives = 485/861 (56%), Gaps = 56/861 (6%)

Query: 5   KLTTKFQEALGDAQSLALGNDNAYIEPAHLLAAMLRQDDGP----RALLERAGVNVPGLT 60
           KL  + + AL  A SL +   +  +   + L  +L   D P    R +L++AG+ V  + 
Sbjct: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLL---DNPLSDVRLVLKQAGLEVDQVK 68

Query: 61  QAAEAAIKKLPQVQGHDIVQVGPELGKLLQ------ATEKEAIKRNDQFIAGELFLLAL- 113
           QA  +   +   +  +      P L +LLQ      +TE E  +      +G +FL AL 
Sbjct: 69  QAIASTYSREQVLDTYPAFS--PLLVELLQEAWLLSSTELEQAELR----SGAIFLAALT 122

Query: 114 -ADSKADIGKTAKENGLSRKSLEAAIDAVRGGQGVNSADAEGQREA-----------LKK 161
            AD        +   G++R++L+     +       +A A+  + A           L +
Sbjct: 123 RADRYLSFKLISLFEGINRENLKKHFAMILS-DSAETAVAKTDKNAANPLQAAAETPLGR 181

Query: 162 YCMDLTERARLGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 221
           +C ++TE+AR G+LDPV+ R+ E+   + +L RR KNNP+++GE GVGK+A++EGLA R+
Sbjct: 182 FCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRV 241

Query: 222 VAGEVPDSLKGKRVLSLDMAALLAGAKFRGEFEERLKTVLNELAKDEGQTIVFIDELHTM 281
           VAG+VP  L+   + SLD+  L AGA  +GEFE+RLK V++ + +     I+FIDE HT+
Sbjct: 242 VAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTL 301

Query: 282 VGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRKYIEKDAALERRFQKIIVGEPSV 341
           +G+G  EG  DA N+LKPALARGEL  V ATT  EY+KY EKD AL RRFQ + + EP++
Sbjct: 302 IGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTI 361

Query: 342 EATIAILRGLQEKYEVHHGVQITDPAIVAAAELSDRYITDRFLPDKAIDLIDEAAAKIKI 401
           +  + ILRGL   YE  H V ITD A+ AAAELS RYI+ R LPDKAID++D A A+I I
Sbjct: 362 DQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAI 421

Query: 402 EMDSKPEVMDRLDRRLIQLQIEREAVRREK---DEASQKRLGLIEDEIVKLQKEIADYDE 458
            M + P+ +  L+    Q Q+E + + R +    E   +RL ++ ++ +  + E A   +
Sbjct: 422 NMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQ 481

Query: 459 IWQAEKAQAQGSAQVREDVDKIKFQIEEWKRKGDFNKVAELQYGQLPALEKRLKEAEASE 518
            WQ +K+  +    +R ++ ++             ++  E     L  +   L+  E  +
Sbjct: 482 SWQQQKSLVESIIALRAELMEL-------------SQAQEQDPDHLLVVRTALQ--EQYQ 526

Query: 519 ASKGKSSAPTLLRTQVGSEEIAEVVARATGIPVAKLMQGERDKLLVMEDKLHERVVGQDE 578
           A      A  L+  QV +++IAEV+A  TG+PV ++   E  K+  +   L + + GQ+ 
Sbjct: 527 ALDAIDHAERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQET 586

Query: 579 AIGAVANAIRRSRSGLSDPNRPTGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMS 638
           AI  +   +  +R+ L  P RP G+FL +GP+GVGKTE    LA  L+  +  L  I+MS
Sbjct: 587 AIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMS 646

Query: 639 EFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLD 698
           E+ EKH+V+RLIG+PPGYVGY EGG LTEA+R+ PYSVVLLDEVEKAHP+V N+  Q  D
Sbjct: 647 EYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFD 706

Query: 699 DGRLTDGQGRTVDFKNTVIVMTSNIGSPIIQAMVGKPSEEIKEAVWDELKNYFRPEFLNR 758
            G + DG+GR +D +N V  +TSN+G   I     +P+ ++ EA++ EL  +F+P  L R
Sbjct: 707 KGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDYADEPA-KLDEALYPELAAFFKPALLAR 765

Query: 759 IDETVVFHALDAKNIESIAAIQLKVLQARLAKMDLGLEV--SPAALAEIAKVGFDPVFGA 816
           + E + +  L  + +  I   +L  L+ +L K     EV    + + EI         GA
Sbjct: 766 M-EVIPYLPLGKEVLAQIVRGKLARLE-KLFKTRYNAEVVIEESLIDEILSRATRSENGA 823

Query: 817 RPLKRAIQQRIENPLSKLLLD 837
           R L+  I+ ++  P+S  LL+
Sbjct: 824 RMLEAIIEGQLLPPVSLALLN 844