Pairwise Alignments

Query, 873 a.a., Chaperone protein ClpB (ATP-dependent unfoldase) from Variovorax sp. SCN45

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score = 1060 bits (2742), Expect = 0.0
 Identities = 543/849 (63%), Positives = 676/849 (79%), Gaps = 8/849 (0%)

Query: 1   MRQDKLTTKFQEALGDAQSLALGNDNAYIEPAHLLAAMLRQDDGP-RALLERAGVNVPGL 59
           MR D+ T+KFQ A+ DAQSLALG D+ YIEP HL+ A+L Q+  P R LL    V+V  L
Sbjct: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60

Query: 60  TQAAEAAIKKLPQVQG-HDIVQVGPELGKLLQATEKEAIKRNDQFIAGELFLLALADSKA 118
                  + +LP+V G    VQ+   LG L    +K A KR D +I+ E++LLA  + K 
Sbjct: 61  RSKLGEMLDRLPKVSGIGGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKG 120

Query: 119 DIGKTAKENGLSRKSLEAAIDAVRGGQGVNSADAEGQREALKKYCMDLTERARLGKLDPV 178
            +G   KE GL+ K +  AI+ +RGGQ VN  +AE  R+AL+K+ +DLTERA  GKLDPV
Sbjct: 121 PLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLDPV 180

Query: 179 IGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGEVPDSLKGKRVLSL 238
           IGRD+EIRR IQVLQRRTKNNPV+IGEPGVGKTAIVEGLAQRI+  EVP+ L+G+RVLSL
Sbjct: 181 IGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL 240

Query: 239 DMAALLAGAKFRGEFEERLKTVLNELAKDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLK 298
           DM AL+AGAK+RGEFEERLK+VLNELAK+EG  I+FIDELHTMVGAGK EG+MDAGNMLK
Sbjct: 241 DMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLK 300

Query: 299 PALARGELHCVGATTLDEYRKYIEKDAALERRFQKIIVGEPSVEATIAILRGLQEKYEVH 358
           PALARGELHCVGATTLDEYR+YIEKD ALERRFQK++V EP+VE TIAILRGL+E+YE+H
Sbjct: 301 PALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELH 360

Query: 359 HGVQITDPAIVAAAELSDRYITDRFLPDKAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLI 418
           H V+ITDPAIVAAA LS RYI+DR LPDKAIDLIDEAA+ I++++DSKPE +D+L+R++I
Sbjct: 361 HHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKII 420

Query: 419 QLQIEREAVRREKDEASQKRLGLIEDEIVKLQKEIADYDEIWQAEKAQAQGSAQVREDVD 478
           QL+IE++A+  E DEAS+KRL ++ +E+ + +++ A+ +E+W+AEKA   G+  ++  ++
Sbjct: 421 QLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE 480

Query: 479 KIKFQIEEWKRKGDFNKVAELQYGQLPALEKRLKEAEASEASKGKSSAPTLLRTQVGSEE 538
           + +  +E  +R GD N+++ELQYG++P LEK+L  A  +E  +      TLLR +V   E
Sbjct: 481 QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQE-----MTLLRNKVTDAE 535

Query: 539 IAEVVARATGIPVAKLMQGERDKLLVMEDKLHERVVGQDEAIGAVANAIRRSRSGLSDPN 598
           IAEV+++ TGIPV+K+++ E++KLL MED LH+RV+GQ EA+  VANAIRRSR+GLSDPN
Sbjct: 536 IAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPN 595

Query: 599 RPTGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEFMEKHSVARLIGAPPGYVG 658
           RP GSFLFLGPTGVGKTELCK LA FLFDSED ++R+DMSEFMEKHSVARL+GAPPGYVG
Sbjct: 596 RPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVG 655

Query: 659 YEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIV 718
           YEEGGYLTEAVRRKPYSV+LLDEVEKAHPDVFN+LLQVLDDGRLTDGQGRTVDF+NTV++
Sbjct: 656 YEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715

Query: 719 MTSNIGSPIIQAMVGK-PSEEIKEAVWDELKNYFRPEFLNRIDETVVFHALDAKNIESIA 777
           MTSN+GS  IQ    +   + IKE V D +  +FRPEFLNR+DE+VVFH L  ++I+SIA
Sbjct: 716 MTSNLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIA 775

Query: 778 AIQLKVLQARLAKMDLGLEVSPAALAEIAKVGFDPVFGARPLKRAIQQRIENPLSKLLLD 837
           +IQL  L+ RLA+ D  LEV   AL  IA VGFDPV+GARPLKRAIQQ +ENPL+K +L 
Sbjct: 776 SIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILA 835

Query: 838 GSFGPKDTI 846
           G F P   I
Sbjct: 836 GKFLPGSPI 844