Pairwise Alignments

Query, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas fluorescens FW300-N2E2

 Score =  301 bits (772), Expect = 9e-87
 Identities = 164/295 (55%), Positives = 203/295 (68%), Gaps = 4/295 (1%)

Query: 10  PDIDDFIDALWLEDGLSKNTLAAYRRDLALFAQWLGEHSGGATLGTAKETDLQAYMGARL 69
           P ID F+DALWLE GLS NT  AYR DLALF  WL E+     L  A    +  ++  RL
Sbjct: 7   PLIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENH--LELINAGRELILDHLAWRL 64

Query: 70  SNRGKATSANRRLTVFKRYYRWALRERRIAADPSIRL-MPARQMPRAIKTLSEKQVDDLL 128
               K  S  R L+  + +YR+ LRE+ IA DP++R+ MP    P   K+LSE  V+ LL
Sbjct: 65  EQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLP-KSLSEADVEALL 123

Query: 129 AAPDVESPLGLRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLGKGSKERLVPFG 188
           AAPD+   +G RDRAMLE++YA GLRV+EL++L    ++L  GVLRV+GKGSKERLVP G
Sbjct: 124 AAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMG 183

Query: 189 GEARRWIERYLEESRPAILDGQQTPDLFVTARGAGMTRVMFWIIVKKHATAAGIHVPLSP 248
            EA  W+ERY+ ++R  +L G+ +  LF + RG  MTR  FW  +K  A  AGI+  LSP
Sbjct: 184 EEAIVWVERYMRDARHELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSP 243

Query: 249 HTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAKHHPRG 303
           HTLRHAFATHLLNHG DLR VQ+LLGH+D+STT IYTHVAR RL+ LHAKHHPRG
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPRG 298