Pairwise Alignments

Query, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score =  159 bits (403), Expect = 6e-44
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 29/310 (9%)

Query: 8   PTPD-----IDDFIDALWLEDGLSKNTLAAYRRDLALFAQWLGEHSGGATLGTAKETDLQ 62
           P PD     ++ F   L  E GLS  T   Y++ L    Q+L +      +G    T L 
Sbjct: 8   PLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQ------VGLTHWTQLD 61

Query: 63  AYMGARLSNRGK-----ATSANRRLTVFKRYYRWALRERRIAADPSIRLMPARQMPRAIK 117
           +    +L  +GK     A+S   RL+  + +  + +    + A+P+  +   R+     K
Sbjct: 62  SAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPK 121

Query: 118 TLSEKQVDDLLAAPDVESPLGLRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLG 177
            L   ++  LL   D + PL +RDRA++ELMY +GLR++ELV++   D++L++G +RV+G
Sbjct: 122 NLDVDEMAQLLEVTD-DDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIG 180

Query: 178 KGSKERLVPFGGEARRWIERYLEESRPAILDGQQTPDLFVTARGAGMTRVMFWIIVKKHA 237
           KG+KER V F G+A+ W+ ++L + R  + D  +T  LFV+  G   TR+    + K+ A
Sbjct: 181 KGNKERKVWFAGQAQEWVGKWL-KLRSQLADSAETA-LFVSKLG---TRISHRSVQKRMA 235

Query: 238 -----TAAGIHVPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERL 292
                 A   H+  SPH LRH+FATH+L    +LRAVQ LLGH +I+TT IYTH+  + L
Sbjct: 236 EWGQKQAVASHI--SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHL 293

Query: 293 KQLHAKHHPR 302
            Q++ + HPR
Sbjct: 294 AQVYDQAHPR 303