Pairwise Alignments

Query, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

Subject, 337 a.a., tyrosine recombinase XerD from Phaeobacter inhibens DSM 17395

 Score =  189 bits (480), Expect = 8e-53
 Identities = 128/314 (40%), Positives = 176/314 (56%), Gaps = 19/314 (6%)

Query: 3   EAAAAPTPDID---DFIDALWLEDGLSKNTLAAYRRDLALFAQWLGEHSGGATLGTAKET 59
           ++A AP  D+     F+DA   + G ++NTL AY RDL   A WLG  +     G+A   
Sbjct: 7   QSANAPKDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKN--RAFGSATRD 64

Query: 60  DLQAYMGA-RLSNRGKATSANRRLTVFKRYYRWALRERRIAADPSIRLMPARQMPRAIKT 118
           D+++Y+ A       +AT A RRL+  K+ YR+A  E   + +P+I++    +     KT
Sbjct: 65  DIESYLIACDAEGLARATRA-RRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPKT 123

Query: 119 LSEKQVDDLLAAPDVESPLGLRDR----AMLELMYASGLRVSELVALKAIDMSLNDGVLR 174
           L   +VD LL A   +S   L DR     M+EL+YA+G+RVSELV L       +  +L 
Sbjct: 124 LEVIEVDRLLDAAR-QSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLL 182

Query: 175 VLGKGSKERLVPFGGEAR----RWIERYLEESRPAILDGQQTPDLFVTARGAG--MTRVM 228
           VLGKG KER+VP    AR     W+         A+  G         +RG    +TR  
Sbjct: 183 VLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHR 242

Query: 229 FWIIVKKHATAAGIHVP-LSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHV 287
           F++++K+ A A G+    +SPHTLRHAFATHLL +G DLRA+Q LLGHADI+TT IYTHV
Sbjct: 243 FYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHV 302

Query: 288 ARERLKQLHAKHHP 301
              RL +L  +HHP
Sbjct: 303 LDARLSELVLEHHP 316