Pairwise Alignments

Query, 223 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  121 bits (304), Expect = 9e-33
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 5/218 (2%)

Query: 7   FDAVFAAWPLLLKGTWITIQLSLIATVLGLVVAIFCAWGKTSGPGWLRFIINAYIEVIRN 66
           F  +  + P+ L G W T+ L  ++ V+GL+ AI  A  + S   W       YI  +R 
Sbjct: 3   FSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLRG 62

Query: 67  TPFLVQLFFFFFAL----PAIGLRWSPQT-AALVAMVVNLGAYATEIIRAGIESIPKGQI 121
           TP LVQL+  ++ +    P     W      ALVA ++N  AY  EIIR  I  +PKG++
Sbjct: 63  TPLLVQLYLIYYGMDQWFPVKDTLWEHAWFCALVAFILNTSAYTAEIIRGAINGLPKGEV 122

Query: 122 EAGRALNLKPWEIFRFVIIKPALKAIYPALTSQFILLMLSSAVVSVISADDLTSVAANLQ 181
           EA +A  +  ++ ++ +I+  AL+   PA +++ I ++  SAV  +++  DLT  A  + 
Sbjct: 123 EAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARLVN 182

Query: 182 SQTFRSFEIYIVVAAIYLALALAFSAMFKLIYKRTLNY 219
           S+ +  FE ++     Y+AL       FK   +R L Y
Sbjct: 183 SRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAY 220