Pairwise Alignments

Query, 597 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 869 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  217 bits (552), Expect = 2e-60
 Identities = 135/400 (33%), Positives = 214/400 (53%), Gaps = 32/400 (8%)

Query: 207 QVRLEKEAAERSDLEKSRFLAAASHDLRQPVHAMSLFLGLLANERLSEHGRYLLENITKA 266
           ++R  K  AE ++L K++FLAA SHDL QP++A  LF   L  +  + +G  L+ NI+ +
Sbjct: 490 RLREAKREAEVANLSKTKFLAAVSHDLLQPLNAARLFTSALLEQPGALNGG-LIRNISNS 548

Query: 267 SAAMGHLFDALLNISRLDAGVIHPRVQSFPLDRLLDQIRTEYTPQAQQKGLALKVRRCAA 326
              + +L   L++IS+LDAGVI P +  F +  LL+ +  E+   A  + L L    C+A
Sbjct: 549 LEDVENLLGTLVDISKLDAGVIKPDIAPFAVSELLENLAMEFRQIAGAEQLQLDFIPCSA 608

Query: 327 CVRSDPMLLERILRNLVSNAIAHTPHGRVLIGCRKRGDAVRIEVWDTGPGIPKHEHERVF 386
            VRSD  LL RILRNL++NAI +TP GRVL+GCR+   ++ IEVWDTG GI   + E +F
Sbjct: 609 LVRSDIQLLARILRNLLTNAIRYTPKGRVLLGCRRHRQSLSIEVWDTGVGIASDKLEEIF 668

Query: 387 WEFHQLRNPERDRSKGLGLGLAIVRRTAALLGHTLSLRSVEGRGTVFLLSVDAQQAAAPE 446
            EF +      ++ +GLGLGLAIV + A +LGH + + S  GRG+ F + V   + A   
Sbjct: 669 QEFKRGEGVRPNQDRGLGLGLAIVEKIARILGHRIRVTSQPGRGSCFAIEVPLAKRAPKA 728

Query: 447 TPTEANAFAAMQAHAPAISAPPAKPATSQLIL---------VIDDDAQNREGLKLLLESW 497
            P                     +P+T++L+L         V+D+D     G++ LLE W
Sbjct: 729 RP---------------------EPSTTELVLQRLQGARVWVLDNDTAICAGMRTLLEGW 767

Query: 498 GHRVIAAPGTAELVELTADVPGKPGLIVSDYRLREHETGVEAIDRLHEEYNDATIPALLV 557
           G +VI A    +L     +   +  L+++DY L    TG++ +  ++     + +PAL++
Sbjct: 768 GCKVITALSEEDLARQVDNFHAEADLMIADYHLDNGHTGIDVVATVNAR-RASPLPALMI 826

Query: 558 SGDTDPARLIEAAARAIPILHKPVEVEALRDWVDKLLAAG 597
           + +       +       ++HKPV    L+  +  +L  G
Sbjct: 827 TANYSNELKQQVRELGHMLMHKPVRPMKLKTAMCHMLEHG 866