Pairwise Alignments

Query, 287 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 281 a.a., aliphatic sulfonate ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  115 bits (289), Expect = 8e-31
 Identities = 75/283 (26%), Positives = 142/283 (50%), Gaps = 9/283 (3%)

Query: 1   MNTRSIDTTVPGAPGAIGAPPSADPEYLAWAAARQKRIWRRRVLPALGIVGLILLWWAVI 60
           M+ + +D ++    G++ A   AD EYL  + A       R  L    ++  + LW A  
Sbjct: 1   MSLQELDRSIIHEGGSVSA--KAD-EYLRRSGAAAGSWLSRYGL----LIAFLALWQAAS 53

Query: 61  VVFGVKPFIAPTPWAVLETLYA--KRDVLLDNLLPTAFEAAGGFVLGNLAAIVIATIFVH 118
               + P + P+  A+L  L+       LLD++  +   +   FV   + AI +  +   
Sbjct: 54  TAGWINPAVFPSVGAILSALWTGISGGALLDDIAISLQRSGTAFVGAVVLAIPLGLLMGQ 113

Query: 119 NKTLQDIFFPVVLMFNAVPLVAKAPVLVLIMGNGVEPKITIAALVCFFPTLVNMVRGLES 178
            + +++   PV+ +F     +A  PV +L++G G   K+ +      FP L++ + G++ 
Sbjct: 114 VRAIENALDPVLQLFRQTSALALYPVFILLLGLGEASKVFVIFWATLFPLLLSTISGVKE 173

Query: 179 VNPQAMELMRVLSASKTEIFFRLRLLNALPYLFSALRIAASMCVIGAVVGEWVGATVGIG 238
           V+ + +E+ RV  AS+  +F R+ L  A+P +F  LR++A+  ++  +  E +GA  GIG
Sbjct: 174 VDSKLIEMARVYGASRLTVFRRVVLPGAVPSIFVGLRLSATTALLLLIASEMIGANKGIG 233

Query: 239 AMILQATFNFDSPLLYAAIVMSATLSGLFFLLVALAEKLVIRW 281
             ++ A +NF  PL++AAI + A L  +    +  A++ + RW
Sbjct: 234 FQVMNAQYNFQIPLMFAAIFILAGLGLVSNYALVFAQRRLCRW 276