Pairwise Alignments

Query, 385 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

Subject, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 203 SSLFVQERSSGALGRLQSLGVSRFTLLASKALPYLGVNALQAVLMIAAG--IWFMPLIGG 260
           S+  V+ER  G L  L +  V    L+  K +PY+ V  +Q  +++  G  I+ +P+ G 
Sbjct: 190 SAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHFIFAVPING- 248

Query: 261 DALSLAGIHWGALLLSLAAVSLAAVSLSLALACLVRSHAQAATIGPMVNVLMAAAGGIMV 320
              +L+ I +G LL   A+++L      L ++ +  +  QA  +   + +      G M 
Sbjct: 249 ---ALSQILFGTLLFISASLTLG-----LVISTIANTQLQAMQMTVFILLPSILLSGFMF 300

Query: 321 PKFVMPGFMQRLVEISPMNWGLEALLTVLLRGGGVADALPQIGRLVVFAALMFFIAVFLF 380
           P   MP   Q L E+ P    +  +  ++LRG  +AD       L +F      +A   F
Sbjct: 301 PYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRF 360

Query: 381 RR 382
           ++
Sbjct: 361 KK 362