Pairwise Alignments

Query, 1028 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  594 bits (1532), Expect = e-174
 Identities = 348/1014 (34%), Positives = 567/1014 (55%), Gaps = 19/1014 (1%)

Query: 1    MNFTDIFIRRPVLAMVVSLLIVVLGLRALAGLPVNQYPKTENGVVTITTAYYGADAATVA 60
            M  +D+ ++RPV A+V+S+L+ V G+ +   L V + P  E+ VV+++T Y GA A  + 
Sbjct: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60

Query: 61   GFITQPLEAAVSQAQGIDYLSSSSSLGVSTITATLRLNYDSNRALTEINTQVNSVRNQLP 120
              IT  LE  ++   GID ++S S  G+S IT T  L YD N  +++I   V   +  LP
Sbjct: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120

Query: 121  PQAQQPVLTVATGQTTDAMYIGFYSDTLPNNNVTDFLVRVVQPKLNAIPGVQTAEILGAR 180
             +A  P +    G    ++YI   S  +    +TD++ RV+  + + I GV + ++ G  
Sbjct: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180

Query: 181  TFALRAWLDAQKMAAFGVTATDVSAALAANNYLAAVGQSKGQMVSVPLTAGTSLHSVDEF 240
               +   +  + MA  GV  +D+S AL   N  +  GQ +     + +       S ++F
Sbjct: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240

Query: 241  KQLSIK-SSNGAIVRLQDVANVTLGSENYDFNVAFNGVRSVFIGIKVAPEANILDVAKQV 299
            + L +K +S+G  + L+DVA+V +G+EN +     +G+ +V +GI    +AN L+VAK+V
Sbjct: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300

Query: 300  RTTFPDLQSQLPSGLTGKIVYDSTDFINTSISEVIKTLVEALVIVTVVIYLFLGSFRAVV 359
                  +Q  LP G    I YDST FI  SISEV  TL     +V +V+Y+F+G  RA +
Sbjct: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360

Query: 360  VPVIAMPLSLIGTFFIMLVLGYSINLLTLLALVLAIGLVVDDAIIVVENVDRHMREGKSP 419
            +P + +P+SLI  F      G+SINL+TL+AL+L+IGLVVDDAI+VVEN+  H+  G+ P
Sbjct: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420

Query: 420  MQASLLAARELGGPILAMTVVLVAVYVPIGFQGGLTGSLFTEFAFTLAGSVVVSGIVALT 479
            + A+    RE+G  ++A T+VLV V++PI F  G+ G LFTEF+  LA +V+ S ++ALT
Sbjct: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480

Query: 480  LSPMMCSRFFKPEQDTGKFATFIEHTFERVHRRY-QLILRSVLKTWPVMIVMGVILVALL 538
            L+P++ S+  K     G+F   I+  F R+   Y Q++ R++   W   +V+    +   
Sbjct: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAA-CIGGS 539

Query: 539  FVMFKMSKSELAPEEDQGIVLSQVVGAPTATINQIQTYADQIFQIAHDTPEYAQLF---- 594
            + + ++  ++L P ED+G++ S V GA   + N++    D + Q     P   Q F    
Sbjct: 540  YGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQ--RLMPLLGQGFLKSF 597

Query: 595  -----QLTGVPSTNAGIAGVLLKPWDQRTRSAHDIQTDLQKRWNGIAGAKVVAFQFPALP 649
                    G      G   ++L+ W+ RT +A +  + ++K   GI   +V  F  P   
Sbjct: 598  SIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF-MPGFR 656

Query: 650  GASGLPVQFVIKTTEPFENLNTLAQQVMDKARADGKFYYIDADLKIDLPQATVVVDRDKI 709
            G S  PVQFV+  ++ +  L T A+++ ++A         D D     P+  V +D+ + 
Sbjct: 657  GGSNEPVQFVLGGSD-YSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRA 715

Query: 710  ATLGITQQDVGNAMGAALGGGYVNYFSIAGRSYKVIPQVQQVDRLNPSDVLNFYIKTPNG 769
            A LGI+ + + + +   LGG  V  F   G  Y V  +  +    N +D+   Y++T  G
Sbjct: 716  AELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATG 775

Query: 770  -VVPASTVASLKYSVQPETVNHFQQLNSVTI-QGVPSG-TQGETLEYLRGVVQQLAPSGY 826
             +V   TV  +        + H+ +  SVTI   + +G T G+ L++L    Q++ P+  
Sbjct: 776  ELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDI 835

Query: 827  SVDYSGQSRQFVQESGNFAITFVFALIIVFLALSAQFESFRDPVVILVSVPLALFGAMIF 886
            SV YSG+S+ F +   + AI F  AL++ +L L+AQFESF +P+V++++VP+ +FG  + 
Sbjct: 836  SVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLG 895

Query: 887  IFWGFASMNIYTQVGLVTLMGLISKHGILIVEVANRLQKQGLSKLDAIVEAAGTRLRPIL 946
            +F     MNIY+Q+G++ L+G+++K+GILIVE AN+L+ +G+    AI++A+  RLRPIL
Sbjct: 896  LFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPIL 955

Query: 947  MTTAAMVFGVLPLVIASGAGAAGRKAMGIVIFSGLSIGTLFTLFVVPAMYLAIA 1000
            MT    + G +PL++++GAG   R A+G VIF G+   TL TL V+PAMY  I+
Sbjct: 956  MTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS 1009