Pairwise Alignments

Query, 1028 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

 Score =  934 bits (2414), Expect = 0.0
 Identities = 487/1011 (48%), Positives = 683/1011 (67%), Gaps = 9/1011 (0%)

Query: 1    MNFTDIFIRRPVLAMVVSLLIVVLGLRALAGLPVNQYPKTENGVVTITTAYYGADAATVA 60
            M FTD+FI+RPVLA+ +S LIV+LGL+A+  + V +YP+  N V+T++T YYGA A  + 
Sbjct: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60

Query: 61   GFITQPLEAAVSQAQGIDYLSSSSSLGVSTITATLRLNYDSNRALTEINTQVNSVRNQLP 120
            GFITQPLE AV+QA  ID+++S S LG STIT T++LN D N AL+++  + NSVR+QLP
Sbjct: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120

Query: 121  PQAQQPVLTVATGQTTDAMYIGFYSDTLPNNNVTDFLVRVVQPKLNAIPGVQTAEILGAR 180
             +A+ P +T++TG TT  +YIGF S+ L ++ +TD+L RVV P+L A+ GV + ++ G  
Sbjct: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180

Query: 181  TFALRAWLDAQKMAAFGVTATDVSAALAANNYLAAVGQSKGQMVSVPLTAGTSLHSVDEF 240
             +ALR WLD  KMAA  ++A DV + L ANNY +A GQ+ G+ V    +A T + +V++ 
Sbjct: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240

Query: 241  KQLSIKSSNGAIVRLQDVANVTLGSENYDFNVAFNGVRSVFIGIKVAPEANILDVAKQVR 300
            + L +K+  G + RL D+A VTL   +  +  + NG  +V   I  AP AN +++AK V 
Sbjct: 241  ESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVL 300

Query: 301  TTFPDLQSQLPSGLTGKIVYDSTDFINTSISEVIKTLVEALVIVTVVIYLFLGSFRAVVV 360
               P+LQ  +PS +   ++YDST  IN SI EVIKT+VEA +IV VVI LFLGS RAV++
Sbjct: 301  EMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLI 360

Query: 361  PVIAMPLSLIGTFFIMLVLGYSINLLTLLALVLAIGLVVDDAIIVVENVDRHMREGKSPM 420
            P++ +PLSLIG   +M ++G+S NL+TLLA+VLAIGLVVDDAI+V+ENVDRH++EG+SP 
Sbjct: 361  PIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPF 420

Query: 421  QASLLAARELGGPILAMTVVLVAVYVPIGFQGGLTGSLFTEFAFTLAGSVVVSGIVALTL 480
            +A+++  RE+  P++AMT+ L AVY PI   GG+TGSLF EFA TLAGSV VSGIVALTL
Sbjct: 421  RAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480

Query: 481  SPMMCSRFFKPEQDTGKFATFIEHTFERVHRRYQLILRSVLKTWPVMIVMGVILVALLFV 540
            SPMMCS+  K  +   KF   + H  +R+  RY+ +L +V+   PV+I    I+ A L +
Sbjct: 481  SPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLPM 540

Query: 541  MFKMSKSELAPEEDQGIVLSQVVGAPTATINQIQTYADQIFQIAHDTPE--YAQLFQLTG 598
            +FK   SELAP ED+G+++    G   A ++ +    D + +I  D PE  +AQ+F  TG
Sbjct: 541  LFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVF--TG 598

Query: 599  VPSTNAGIAGVLLKPWDQRTRSAHDIQTDLQKRWNGIAGAKVVAFQFPALPGA-SGLPVQ 657
            VP++N       + PW QR  S   +   +      I G  V AFQ P LPGA SGLP+Q
Sbjct: 599  VPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQ 658

Query: 658  FVIKTTEPFENLNTLAQQVMDKARADGKFYYIDADLKIDLPQATVVVDRDKIATLGITQQ 717
            FVI T   FE+L T+A  V+ + +A+  F Y D DL  D     + +D+DK    G+T Q
Sbjct: 659  FVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQ 718

Query: 718  DVGNAMGAALGGGYVNYFSIAGRSYKVIPQVQQVDRLNPSDVLNFYIKTPNG-VVPASTV 776
            D+G  +   +  GYVN   + GRSY+VIPQV++  RLNP  + ++Y++  +G V+P  ++
Sbjct: 719  DIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSL 778

Query: 777  ASLKYSVQPETVNHFQQLNSVTIQGVPS-GT-QGETLEYLRGVVQQLAPSGYSVDYSGQS 834
             ++    +P ++ HF QLNS T+  VP+ GT  G+ + +   +     P GYS DY G++
Sbjct: 779  VTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEA 838

Query: 835  RQFVQESGNFAITFVFALIIVFLALSAQFESFRDPVVILVSVPLALFGAMIFIFWGFASM 894
            RQ+V E      TF  AL I+FL L+ QFES RDP+VI+VSVPLA+ GA+I + WG A+M
Sbjct: 839  RQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATM 898

Query: 895  NIYTQVGLVTLMGLISKHGILIVEVANRLQKQG-LSKLDAIVEAAGTRLRPILMTTAAMV 953
            NIY+QVGL+TL+GLI+KHGILI EVA   Q    LS+++A++ AA  RLRPILMTTAAM+
Sbjct: 899  NIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMI 958

Query: 954  FGVLPLVIASGAGAAGRKAMGIVIFSGLSIGTLFTLFVVPAMYLAIAARHK 1004
             G++PL+ A+GAGAA R ++GIVI SGL+IGTLFTLFV+P +Y  +A +HK
Sbjct: 959  AGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHK 1009