Pairwise Alignments

Query, 384 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Variovorax sp. SCN45

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  340 bits (872), Expect = 4e-98
 Identities = 164/379 (43%), Positives = 243/379 (64%), Gaps = 1/379 (0%)

Query: 6   LLDYDTLRFIWWLLIGVLLVGFAVTDGFDLGSGMLLPFAARNDIERRVVINSVGPVWEGN 65
           + +YDTLR IWW LIG LL+GF +TDGFD+G G LLP   +++ ++RV+INS+ P W+GN
Sbjct: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60

Query: 66  QVWLILGGGAVFAAWPQLYAVSFSGFYLAMFVILTALILRPVAFKFRSKRESPQWRARWD 125
           QVWLI  GGA+FAAWP +YA SFS  Y+AM++IL AL LRP+A ++R+K ++P WR   D
Sbjct: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120

Query: 126 WVLFFSGFVPALICGVAMGNVLQGVPFRFNNDMHIFYDGGFFGLLNPFAILCGLVSVAML 185
             +  SG +P L+ GVA GN++QG+PF  N  + + Y G F  L+ PF++L G + V M 
Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180

Query: 186 VMHGAAWLLLKTAGPVAERARTYGMVAAVLTIALYALAGVLLATSIGGYRISSVIDAVGP 245
           ++ G+AWL LKT+  + ++AR    ++ +    L+ + G  +   + GY I S +D    
Sbjct: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239

Query: 246 SNPMLKTVELHAGAWTANYAAHPWTMAAPAAGFVGALGALLGLALRRPVLSLLTAALGIA 305
           SNP+ K V   AGAW  N+  +PW   AP  G + A+G  L    +   ++ + A++  A
Sbjct: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299

Query: 306 GIILSVGASMFPFILPSSIDPRASLTVWDSSSSHLTLFIMLVVTAFFIPIIVAYTSWVYH 365
            IIL+ G +MFPFI+PSS +P  SLT+WD++SS  TL IM  V    +PII+ YT++ Y 
Sbjct: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359

Query: 366 VLWGKVDEKAIREESGHAY 384
            ++G++D++ I       Y
Sbjct: 360 TMFGRLDKQYIERNHHSLY 378