Pairwise Alignments

Query, 384 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Variovorax sp. SCN45

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  392 bits (1006), Expect = e-113
 Identities = 194/379 (51%), Positives = 255/379 (67%), Gaps = 1/379 (0%)

Query: 6   LLDYDTLRFIWWLLIGVLLVGFAVTDGFDLGSGMLLPFAARNDIERRVVINSVGPVWEGN 65
           + DY+ LR IWW+LIGVLLVGFA+TDGFD+G G L+P   +ND ERRV+INS+ P W+GN
Sbjct: 1   MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN 60

Query: 66  QVWLILGGGAVFAAWPQLYAVSFSGFYLAMFVILTALILRPVAFKFRSKRESPQWRARWD 125
           QVWLI  GGA+FAAWP +YA SFSGFYLAM V L AL LRPV   +RSK ES +WR  WD
Sbjct: 61  QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD 120

Query: 126 WVLFFSGFVPALICGVAMGNVLQGVPFRFNNDMHIFYDGGFFGLLNPFAILCGLVSVAML 185
             +  SGF+P +I GVA GN+LQGVPF+ ++ +   Y G FFGLLNPFA+LCGLVS+ M 
Sbjct: 121 LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT 180

Query: 186 VMHGAAWLLLKTAGPVAERARTYGMVAAVLTIALYALAGVLLATSIGGYRISSVIDAVGP 245
           ++ G+AWL +KT   V +RAR    +  +LT   +  AG      I GY I   ID    
Sbjct: 181 LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAG-FWVQHIDGYMIVGAIDGNAA 239

Query: 246 SNPMLKTVELHAGAWTANYAAHPWTMAAPAAGFVGALGALLGLALRRPVLSLLTAALGIA 305
           SNP+ K V   AGAW  N+   P    APA G +  L ++L   L +  L+ LT++LG A
Sbjct: 240 SNPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNA 299

Query: 306 GIILSVGASMFPFILPSSIDPRASLTVWDSSSSHLTLFIMLVVTAFFIPIIVAYTSWVYH 365
           G+I + G +MFPF++PSS++P  SLT+WD++SS LTL +M VV    +PII+ YT W Y+
Sbjct: 300 GVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYY 359

Query: 366 VLWGKVDEKAIREESGHAY 384
            ++G++D+K I +     Y
Sbjct: 360 KMFGRLDDKFIEDNKNSLY 378