Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  124 bits (310), Expect = 5e-33
 Identities = 95/361 (26%), Positives = 164/361 (45%), Gaps = 30/361 (8%)

Query: 9   VAALALGKFLQIRALIAAVPKPGPQTVSTV--EVQKLQWQSQFTAVGTLNPVRGADLSTE 66
           V +L L   L   A+++A     P  +S V   VQ  Q     + VG L   +  D++ E
Sbjct: 6   VLSLTLLTLLMNSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAE 65

Query: 67  VAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKRDQAQLAVQAV 126
           VAG V  +  ++ Q VK G +L++L+ D   A L  A+A        L   +  L   A+
Sbjct: 66  VAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAI 125

Query: 127 SQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVNAGDKLVTLQ 186
           +  +IDA    ++  +A++    A +A   I APF G +G    + G++V+AG +L+TL 
Sbjct: 126 TPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLD 185

Query: 187 TLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDAATRNVQVEAT 246
            L  + +D  +P++ L  L+ G  V  + + +P   F G + A+  +++  T N++V   
Sbjct: 186 NLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVH 245

Query: 247 ISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEPPKAGAPGTP 306
             NP Q L PGM  + +I        + +P  A+ Y+     VYV+ +            
Sbjct: 246 FPNPDQRLKPGMLMSARIHFPAISAPI-IPVQALEYSGTKRFVYVIGEDN---------- 294

Query: 307 GTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQNKLKNGTPV 366
                            VA++  V  G    +Q+ I KGL+ G+ +V  G   +++   V
Sbjct: 295 -----------------VAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARV 337

Query: 367 T 367
           +
Sbjct: 338 S 338