Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  176 bits (447), Expect = 7e-49
 Identities = 117/379 (30%), Positives = 183/379 (48%), Gaps = 26/379 (6%)

Query: 5   VLLLVAALALGKFLQIRALIAAVPKPGPQ-TVSTVEVQKLQWQSQFTAVGTLNPVRGADL 63
           +LL  + +    F Q +       +P P+  V+ V    + W     A+G + P +G  L
Sbjct: 13  ILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTL 72

Query: 64  STEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKRDQAQLAV 123
           +TE AG++  + F+SG  V     LV L++  + A L S EA    A    +R +   A 
Sbjct: 73  TTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYKGLFAK 132

Query: 124 QAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVNAGDKLV 183
            ++S+   D       A  A +E   A +A++ I+APFAG +GI  +  GQY+  G  +V
Sbjct: 133 GSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQPGTDIV 192

Query: 184 TLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDAATRNVQV 243
            L+    + + FT+PQ+ ++ +++ Q V++ VD +P  SF G I+AI P V   +  +QV
Sbjct: 193 RLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQV 252

Query: 244 EATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEPPKAGAP 303
           +A I N    L  GMFA   I +   + ++TLP TA+TY  YG  VY+V +    K    
Sbjct: 253 QADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKR--- 309

Query: 304 GTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQNKLKNG 363
                                 QQ  V+ G        I++G++ G VVV++GQ +L NG
Sbjct: 310 ---------------------VQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNG 348

Query: 364 TPVTVDNSVKPTNDPAPTP 382
             V +  S   T  PA TP
Sbjct: 349 AKVRIVES-DATTPPAETP 366