Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 367 a.a., NolF secretion protein from Sinorhizobium meliloti 1021

 Score =  104 bits (259), Expect = 5e-27
 Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 16/257 (6%)

Query: 52  VGTLNPVRGADLSTEVAGLVRNVHFKSGQDVKAGALLV--ELNADSDIALLHSAEAAAAQ 109
           VG+L P+R + L++ V+  +  +  + G  V AG LLV  E  A         AEA A  
Sbjct: 61  VGSLTPIRRSTLTSRVSSTIIELPVQIGDVVNAGDLLVRFERGALESAVTGRKAEADALS 120

Query: 110 AAT-----VLKRD----QAQLAVQAVSQAQIDADVNDLKA----KRAQVEQQAAVVAKKS 156
           A T     VL+R+    +   A +A   A + ADV DL+A    K+A+V      ++   
Sbjct: 121 AQTELAEAVLERNTRLGERGAASEATRLAAL-ADVLDLRAQLRSKQAEVSDAERSLSHAE 179

Query: 157 IRAPFAGRLGITALNPGQYVNAGDKLVTLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVD 216
           +RA F G +   ++  GQ V    +L+T+  L+ + VD  +P  ++  + + Q V LTV+
Sbjct: 180 VRAEFGGVIAARSVEEGQTVPLNTQLMTIVELNRLEVDAGVPTSRIPLIRLKQSVELTVE 239

Query: 217 TFPGQSFSGKINAISPKVDAATRNVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLP 276
            FPG++FSG++  ISP  DA +R V+V   + N + +L  GMF    + +   ++ + LP
Sbjct: 240 GFPGRTFSGEVARISPTADAGSRAVRVFIAVDNEEGLLRGGMFTIGDLRVDDQKDVIALP 299

Query: 277 STAVTYNPYGSTVYVVK 293
           + ++ ++  G  V  V+
Sbjct: 300 AASIRHDADGFFVLKVE 316