Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 372 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  177 bits (448), Expect = 6e-49
 Identities = 114/387 (29%), Positives = 197/387 (50%), Gaps = 30/387 (7%)

Query: 5   VLLLVAALALGKFL--------QIRALIAAVPKPGPQTVSTVEVQKLQWQSQFTAVGTLN 56
           V+L +A + LG  +        +I   IA +P+     V+ + V   +WQ    A+G + 
Sbjct: 7   VMLTIALVTLGSVIGFNLFVKGKIAEAIANMPE-AEFPVTALAVSPTKWQPTIDAIGFVE 65

Query: 57  PVRGADLSTEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKR 116
           P +G  ++ E AG+V N+ F++G ++    LLV L+   + A L +       +    KR
Sbjct: 66  PHQGVTIANEAAGVVTNIAFENGSNISKDQLLVALDTRVEKANLQAKLVQLPASEADFKR 125

Query: 117 DQAQLAVQAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYV 176
                A ++VS+  +D       A +A +E   A + ++ IRAPF+G +GI  +N G+Y+
Sbjct: 126 LTRLYAQKSVSKQDLDNAEAKYLALKADIESLEATIGRREIRAPFSGLVGIRNINLGEYL 185

Query: 177 NAGDKLVTLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDA 236
             G  +V L+ +  + + FT+PQ QL  +AVGQ +++ VD +P ++F G+I AI P V  
Sbjct: 186 QVGSDIVRLEDISTMKIRFTIPQTQLPRVAVGQKIHVYVDAYPEEAFEGEIAAIEPAVFY 245

Query: 237 ATRNVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAE 296
            +  +Q++A I N    L  GMFA V + +   ++++ LP TA+ +  YG++VY+V++  
Sbjct: 246 QSGLIQIQARIPNDHARLRSGMFARVSVLLDKLEQQIVLPQTAINFTLYGNSVYLVEK-- 303

Query: 297 PPKAGAPGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSG 356
                              D +G+  L  +Q+ V      G+   +   L+ G +VV+SG
Sbjct: 304 ------------------HDENGQAVLRVRQINVNVLERSGNDALVTGPLKPGDLVVTSG 345

Query: 357 QNKLKNGTPVTVDNSVKPTNDPAPTPQ 383
           Q +L N + V+V    K   D A  P+
Sbjct: 346 QIRLSNNSKVSVVED-KAMTDAANMPK 371