Pairwise Alignments

Query, 344 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

Subject, 345 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score = 93.6 bits (231), Expect = 7e-24
 Identities = 89/342 (26%), Positives = 140/342 (40%), Gaps = 14/342 (4%)

Query: 8   IPIAFVQGMLSGLLARGQAAPIDARAALEDAGIEPALLEAPGARVTAEQYVALFALLMER 67
           + + F+  +   L   G     D +  LE  G++   L  P AR++  +Y+ L    ++ 
Sbjct: 11  LSVGFLHSLSEALQLHGH----DPKPLLEAYGLDAERLAEPHARLSIPRYMRLGHAAIQL 66

Query: 68  LDDEALCFLSRRLKR-GSFALMTRATLGAPTFEVALRRVAHTFSLLQDDLTLVLLQDGPL 126
             D AL     RL++ G   L       APT   A R +    +L   +           
Sbjct: 67  AGDPALGLEMGRLRKPGHLGLAGLTAAQAPTVREAARALIRYEALYASNYRGSSSFHEDA 126

Query: 127 AGFGLRLNDSAAVQ--QNFLHELMLRVYWRLLAWLHGGRLAARRFDFGFELPPYADGYAK 184
           AG  LR    +       F+ + +L  +   LA L G  +        F  P YA  Y  
Sbjct: 127 AGAWLRFYSISPYNAYNRFVVDTVLASWVAQLARLSGQAIVPTAIHIDFAAPDYAQRYEA 186

Query: 185 VFPGPLQFGQPCTAVWFDAGAL--QTPVHRDA--QAMNAFLAAAPANVILPRLAEQAVSA 240
           +F  P+ F      +  D   L  + P H     + +     A        R   + V+ 
Sbjct: 187 LFGRPVCFEAQANQLQLDQRTLAQRNPDHCPGTWRHLLELCEAELERRTRTRSLRERVAQ 246

Query: 241 RVRSVLQQNRPAWADLATAASSLHMSVSTLQRHLATEGTSFQSLKDQLRRDLAIVRLNTS 300
            +  +L+   P   DL   A+ L M   TL+R LA E +S++ + +  RRDLA+  +  +
Sbjct: 247 ILGPMLKGQEP---DLQQIAARLQMPAWTLRRKLAEEDSSYRVILNDTRRDLAMAYIRDT 303

Query: 301 TVPLAALAEELGFADSAAFQRAFKAWTGGAPGSYRRRRETGS 342
                 +A  LGF+ + AFQRAFK W+G  PG YRR +  G+
Sbjct: 304 ESAFGEIAWLLGFSSAEAFQRAFKRWSGQTPGDYRRTQRRGA 345