Pairwise Alignments

Query, 519 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 574 a.a., acyl-CoA synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  242 bits (618), Expect = 2e-68
 Identities = 173/537 (32%), Positives = 253/537 (47%), Gaps = 39/537 (7%)

Query: 7   LHRSVQQHPDKVAV--RFAGRTRSFRDYADRVARLAGALRRLGMQPGDRVAMLALNSDRY 64
           L +    HPD++A+     G   S+++Y   +  LA  L  +G++PGDRV + + N+  +
Sbjct: 37  LDQMAASHPDQLAIVMHHQGIRWSYQEYQSHIDELAAGLLAIGIKPGDRVGIWSPNNIEW 96

Query: 65  LEYQMAVPWGGGVLNPCNIRWSAAEILYSLEDSGSTILLVDENFRA-------------L 111
              Q A    G ++   N  +   E+ Y+L + G   ++  E F++             L
Sbjct: 97  CLTQFATAKIGAIMVCINPAYRPEELQYALNNVGCRAIICAEKFKSSHYLSMLYELAPEL 156

Query: 112 VEQMRGQATS-----LREVIYCGDGALPAGMHGYEALIDAAAPVPDTARRDE-------D 159
            + + GQ  S     L  VI  GD A P GM  +  L          A +D        D
Sbjct: 157 KQCLPGQLESANLPSLEFVIRMGDEASP-GMLNFNHLKRPLTESDRKALKDTAAQLSPFD 215

Query: 160 LAGIFYTGGTTGFPKGVMLSHTNICSSGFAALGEGLAPPDSSYLHAAPMFHLADMGLATP 219
              I +T GTTG PKG  LSH NI ++G           +       P++H   M L   
Sbjct: 216 AINIQFTSGTTGSPKGATLSHHNILNNGLLVAKAMRLGLEDRLCIPVPLYHCFGMVLGNL 275

Query: 220 HWFQGSTHVIVPS--FSPEAVLNAIAADRVTHALLVPTMIQMLVDHPSMREPRDLRSLRC 277
                    I PS  F P   L  + A+R T    VPTM    ++HP  +   DL SLR 
Sbjct: 276 SCISVGASAIYPSDSFDPLTTLEVVEAERCTALHGVPTMFIAQLEHPEFKR-FDLSSLRT 334

Query: 278 ITYGASPISEAVLNRAMEAFPGVEFAQAYGMTELSPIATINPPSNHTAEGRKRGK-LRSA 336
                +   E V+ R  +     E    YG TE SPI      +N T  G    K + + 
Sbjct: 335 GVMAGATCPEEVMRRVQDLMYMKEVLIGYGQTECSPI------NNMTEIGSSLEKRVTTV 388

Query: 337 GRASYCMEVRIVDADGAEVPRGTVGEVAVRGPNVMQGYWNKPEQTAAAV-RDGWMHTGDG 395
           GRA    +V+IVD  G  +P G  GEV  RG  VMQ YWN  E+TAA +  +GW+H+GD 
Sbjct: 389 GRALAHTQVKIVDEFGEVLPVGQPGEVCSRGYCVMQFYWNDAEKTAATIDSEGWLHSGDL 448

Query: 396 AYMDDDGYIFVVDRLKDMIISGGENVYSAEVENAINQHPAVAACAVIGIPSDEWGEAVHA 455
             MD +GY+ +V R+KDMII GGEN+Y  E+E  +  HP V   A+ G+ S+++GE V A
Sbjct: 449 GEMDSEGYVKIVGRIKDMIIRGGENIYPREIEEKLYTHPDVQDAAIFGVKSEKYGEEVCA 508

Query: 456 ALVLKPGQGIRPEELIAHCKTLIASYKCPRSVAVLDALPLSGAGKVLKTKLREPFWQ 512
            + ++PG  +  EE+        A +K PR +  ++  P++  GK+ K K+RE  +Q
Sbjct: 509 WIKVQPGASVTEEEIRHFLTEKFAYFKVPRYIKFVEQYPMTVTGKIQKFKMREMMYQ 565