Pairwise Alignments

Query, 307 a.a., Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) from Variovorax sp. SCN45

Subject, 278 a.a., shikimate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 12  YLIPGDPVRNVRLPRMFNAVFERFGIDAVLLPMQ-VPVRDFAVFFKSAFLARNVRGMVIA 70
           Y + G+P+ + + P   + +F R    +++   Q VPV  F    K  F A+  RG  + 
Sbjct: 8   YAVFGNPINHSKSP-FIHTLFARQTQQSMIYTAQCVPVDGFTEAAKH-FFAQGGRGCNVT 65

Query: 71  PPHKPLVVDLLDGCGLFGRVAGSVNVVRRTEGDQLEGDLFDGEGLIGALDHCNIPFRGKR 130
            P K       D      R+AG+VN +++ +  ++ GD  DGEGL+  L    +  +G  
Sbjct: 66  VPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGAT 125

Query: 131 VLIVGAGVSAAAIGVALAEGGVVNGATHIAFYDKAAGKAAGVAAKLDAFFDATVVAVDSN 190
           +L++GAG +A  +   L +         I   ++   KA  +A  + A+ +    A +  
Sbjct: 126 ILLIGAGGAARGVLKPLLD----QQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE-Q 180

Query: 191 APEGYDLVVNATPLGLVEGDALPVDVARMDDHAALFDILLRNQPTPLVRAARARGLNAQA 250
             + YD+++N+T   L +G+   +D       +  +D++     T   + AR  G  AQA
Sbjct: 181 LKQSYDVIINSTSASL-DGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGC-AQA 238

Query: 251 --GFEMLIQQ 258
             G  ML+ Q
Sbjct: 239 IDGLGMLVGQ 248