Pairwise Alignments

Query, 393 a.a., N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Variovorax sp. SCN45

Subject, 377 a.a., succinyl-diaminopimelate desuccinylase from Vibrio cholerae E7946 ATCC 55056

 Score =  396 bits (1018), Expect = e-115
 Identities = 207/386 (53%), Positives = 265/386 (68%), Gaps = 14/386 (3%)

Query: 2   SRTLQLAEQLISRPSVTPDDAGCQQILGERLALLGFTLETIESGPADFRVTNLWAVRRPA 61
           S  L LA++LISR SVTP DAGCQ ++ ERL  LGF +E++         TN WA R   
Sbjct: 4   SPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDT----TNFWARR--- 56

Query: 62  DAAATTRTLVFAGHTDVVPTGPVEQWTSHPFTPTHRDGKLYGRGACDMKTSVAAFVTSIE 121
                +   VFAGHTDVVP GP+ QW + PF PT  DG L+GRGA DMK S+A  + ++E
Sbjct: 57  --GTQSPLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVE 114

Query: 122 DFLQAVPEPRLTLALLLTSDEEGPGVDGTVVVCNTLAARGEVIDYCIVGEPTAVERCGDM 181
            F+   P+ + ++  L+TSDEEGP ++GTV V  TL AR E+ID CIVGEP++    GD+
Sbjct: 115 RFIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDV 174

Query: 182 IKNGRRGTMSGKLTVKGVQGHIAYPHLAKNPVHSVAPALAELVAINAAGGWDAASNPYFQ 241
           +KNGRRG+++G L VKG QGH+AYPHLA NPVH   PALAEL    AA  WD   N YF 
Sbjct: 175 VKNGRRGSITGDLKVKGTQGHVAYPHLANNPVHKALPALAEL----AATQWD-EGNAYFP 229

Query: 242 PTSWQISNFHSGTGASNVIPGSAVIDFNFRFSTESTPESLQQRVHAVLDAHQVDYTLAWT 301
           PTS+QI N  +GTGASNVIPG   + FNFRFSTE T E +++RVH+VLDAH +DY + WT
Sbjct: 230 PTSFQIPNLQAGTGASNVIPGEFDVQFNFRFSTELTDEEIKRRVHSVLDAHGLDYDVKWT 289

Query: 302 IGGLPFLTTPGELVTAVQGAIRDETGIETELSTSGGTSDARFIAKICRQVVELGPVNASI 361
           + G PFLT  GEL+ AV  A+ +       L T+GGTSD RFIA++  QVVELGPVNA+I
Sbjct: 290 LSGQPFLTDTGELLAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATI 349

Query: 362 HKIDEHIDVAEIETLKNIYVRTLKQL 387
           HK++E + +A++E L ++Y +TL  L
Sbjct: 350 HKVNECVRIADLEKLTDMYQKTLNHL 375