Pairwise Alignments

Query, 577 a.a., Type IV fimbrial assembly, ATPase PilB from Variovorax sp. SCN45

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  357 bits (915), Expect = e-103
 Identities = 198/455 (43%), Positives = 290/455 (63%), Gaps = 14/455 (3%)

Query: 127 IKFASQMGVDWVIAEYD-KLSRMIEAAAVSAAETINSIVGSEFEFDEVTADTSGDANEQA 185
           +K A Q+ ++   AE++ KL+++ +  +  A + +  I     +F  +  +     NE  
Sbjct: 58  VKHAFQL-IELSQAEFESKLTQVYQRDSSEARQLMEDIGADSDDFFSLAEELP--QNEDL 114

Query: 186 IAEVEDAPVVRFLHKMLLDAVGMRASDIHFEPYEHNYRVRFRVDGELREIASPPTVIKDK 245
           +   +DAP+++ ++ ML +A+   ASDIH E +E    +RFRVDG LRE+ +P   +   
Sbjct: 115 LESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSL 174

Query: 246 LASRIKVISRLDISEKRVPQDGRMKLKIGPDRVIDFRVSTLPTLFGEKIVVRILDPSSAR 305
           L SR+KV+++LDI+EKRVPQDGR+ L+IG  R +D RVST+P+  GE++V+R+LD ++ R
Sbjct: 175 LVSRVKVMAKLDIAEKRVPQDGRISLRIG-GRAVDVRVSTMPSSHGERVVMRLLDKNATR 233

Query: 306 LGIDALGYDADEKARLLHAIGRPYGMVLVTGPTGSGKTVSLYTCLNLLNQPGVNIATAED 365
           L + +LG  A         I RP+G++LVTGPTGSGK+ +LY  L  LN    NI T ED
Sbjct: 234 LDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 293

Query: 366 PSEINLPGVNQVNVNERAGLTFAAALRAFLRQDPDIIMVGEIRDLETADISIKAAQTGHL 425
           P E ++ G+ Q  VN R  +TFA  LRA LRQDPD++MVGEIRDLETA I+++A+ TGHL
Sbjct: 294 PIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHL 353

Query: 426 VLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCTVCRAP--ADVPREAL 483
           V+STLHTN A   +TR+R+MGI PF I+SS++ + AQRL R LC  C+ P  AD  +  L
Sbjct: 354 VMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKL 413

Query: 484 LDAGFQEEQLDGSWKPYRPVGCSACS-GGYKGRVGIYQVMPISEAIQEIILRDGSALDIA 542
            D+  +E  +      YR  GC  C+  GY+GR GI++++ + +A+QE+I  +       
Sbjct: 414 FDSKKKEPLI-----LYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGE-QAM 467

Query: 543 QQSEREGVRSLRQSGLRKVMQGLTSLEEVVACTNE 577
           ++  R    S+R  GL KV QG+TSLEEV+  T E
Sbjct: 468 EKHIRATTPSIRDDGLDKVRQGITSLEEVMRVTKE 502