Pairwise Alignments

Query, 577 a.a., Type IV fimbrial assembly, ATPase PilB from Variovorax sp. SCN45

Subject, 585 a.a., type II secretion system protein E (GspE) from Pseudomonas syringae pv. syringae B728a

 Score =  362 bits (928), Expect = e-104
 Identities = 206/530 (38%), Positives = 315/530 (59%), Gaps = 7/530 (1%)

Query: 46  TSFIAELTGTGAVSAADLAHTLSSAFGAPLLDLDAIDHQRLPKDLLDPKLCLAYRIVVLS 105
           T  +  LT  G VS  +LA   ++   APLL  DA+     P   L  +    Y++V + 
Sbjct: 58  TELLGLLTRLGLVSEFELARAWAALLQAPLLLADAVPPLLDPLPPLTERFMRHYQVVPVG 117

Query: 106 KRNNRLIVATADPSDQQAAEKIKFASQMGVDWVIAEYDKLSRMIEAAAVSAAETINSIVG 165
             +  L V +A+P      + I +A ++ V   I   +++  +IE         + +++ 
Sbjct: 118 WSDQGLQVLSANPGTLYPFQAIAYACEVPVRLSIGPRNEVETLIERYYGQGRSAMGTLIE 177

Query: 166 SEFEFDEVTADTSGDANEQAIAEVEDAPVVRFLHKMLLDAVGMRASDIHFEPYEHNYRVR 225
           +    DE         + + +A   +APV+R ++ +L  AV  RASDIH EP+E   +VR
Sbjct: 178 N---LDEEGGSLEDIEHLKDLAS--EAPVIRLVNLILQRAVEQRASDIHIEPFESQLKVR 232

Query: 226 FRVDGELREIASPPTVIKDKLASRIKVISRLDISEKRVPQDGRMKLKIGPDRVIDFRVST 285
           +R+DG L E  +PP+     + SR+K+++RLDI+E+R+PQDGR+ L+I   + +D RVST
Sbjct: 233 YRIDGVLHEAEAPPSSSSAAVISRVKIMARLDIAERRLPQDGRIMLRI-QGKELDLRVST 291

Query: 286 LPTLFGEKIVVRILDPSSARLGIDALGYDADEKARLLHAIGRPYGMVLVTGPTGSGKTVS 345
           +PT FGE +V+R+LD  +      +LG+D +     L  + RP+G++LVTGPTGSGKT +
Sbjct: 292 VPTSFGESVVMRLLDRQTINFDFPSLGFDGERLDEFLDVLERPHGILLVTGPTGSGKTTT 351

Query: 346 LYTCLNLLNQPGVNIATAEDPSEINLPGVNQVNVNERAGLTFAAALRAFLRQDPDIIMVG 405
           LYT L+ LN     I T EDP E  L G+NQ+ V    GL FA ALR+ +RQDPD+IM+G
Sbjct: 352 LYTALSRLNTAERKIITVEDPVEYQLEGINQIQVKPSIGLDFAGALRSIVRQDPDVIMIG 411

Query: 406 EIRDLETADISIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLA 465
           E+RDLET  I+I+++ TGHLVLSTLHTN A  ++TR+ +MG+  + IAS+V  I AQRL 
Sbjct: 412 EMRDLETCRIAIQSSLTGHLVLSTLHTNSAAASITRLLDMGVESYLIASTVNGILAQRLV 471

Query: 466 RRLCTVCRAPADVPREALLDAGFQEEQLDGSWKPYRPVGCSACSGGYKGRVGIYQVMPIS 525
           RRL    R   D P E + + G +    +   + YRP    A  GGY+GR  I +++ ++
Sbjct: 472 RRLDPATREAFDAPPELIAEHGLERFTDERPIRLYRP-RADAPGGGYRGRSAITELLVMN 530

Query: 526 EAIQEIILRDGSALDIAQQSEREGVRSLRQSGLRKVMQGLTSLEEVVACT 575
           E ++ +++R   A  + + + R G+R+L + GLR+ + G+TSLEEV+  T
Sbjct: 531 EELRSLLMRHADASTLEEAARRGGLRTLHEEGLRQAVAGVTSLEEVLRVT 580