Pairwise Alignments

Query, 409 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score =  183 bits (465), Expect = 7e-51
 Identities = 115/403 (28%), Positives = 207/403 (51%), Gaps = 13/403 (3%)

Query: 18  FEWEGKDRNGKLVRGELRAAGENQVQAALRRQG-----VLASKIKKRRMRSG-----KKI 67
           FE++  D  G+  +G +      QV+  L+ Q      V+ +++K  R RS      + I
Sbjct: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63

Query: 68  KPKDIAIFTRQLATMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSMAFR 127
              D+A+ TRQLAT++++G+PL +    V   +    +  +L  +R+ V  G +LS +  
Sbjct: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123

Query: 128 KFPKYFDNLYCNLVEAGEAAGILEELLDRLATYMEKTEAIKSKIKSALMYPTSVIVVAFV 187
            +P  FD L+ ++V AGE +G L+ +L+RLA Y E  + ++SK++ A++YP  ++V A  
Sbjct: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183

Query: 188 VVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAISEFFVSYWWLIFGGLGGGIYFFLQAW 247
           +VA ++  V+P     F   G  LPA T F++  S+F   +   +  GL   IY  L  W
Sbjct: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY--LVRW 241

Query: 248 KRNERVQRV-MDRALLRVPIFGVLIEKSCVARWTRTLATMFAAGIPLVEALDSVGGASGN 306
              +   R+  DR ++ +P+ G +      AR+ RTL+   ++ IP+++ +        N
Sbjct: 242 LLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTN 301

Query: 307 TVYGDATAKIQQEVSTGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYES 366
                      + V  G+SL  A+    LFP M++ M A GE+SG ++ ML +AAD  ++
Sbjct: 302 QFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDN 361

Query: 367 EVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFKLGQVV 409
             +  V     +  P +I  +  ++  IV++  +PI ++  ++
Sbjct: 362 SFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404