Pairwise Alignments

Query, 409 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

Subject, 423 a.a., type II secretion system protein (RefSeq) from Shewanella sp. ANA-3

 Score =  391 bits (1005), Expect = e-113
 Identities = 192/412 (46%), Positives = 288/412 (69%), Gaps = 6/412 (1%)

Query: 2   ATVASSRSQPTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRM 61
           A  +  +SQP  K + FEW+G +R+G+   GELR A   ++++ L+ QGV    ++K+  
Sbjct: 12  AKKSEQKSQP--KIYTFEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSA 69

Query: 62  RSGK----KIKPKDIAIFTRQLATMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVE 117
              K    KI P DIA+ TRQ+ATM+ AGVPL+ + +++GRG+  A + +LL  I S+++
Sbjct: 70  ALFKLGDAKISPMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQ 129

Query: 118 TGTSLSMAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATYMEKTEAIKSKIKSALMY 177
           +G  LS + R   +YFD+LY +LV AGE +G L+ + DR+ATY EK+EA+KSKIK A+ Y
Sbjct: 130 SGIPLSDSLRPHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFY 189

Query: 178 PTSVIVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAISEFFVSYWWLIFGGLG 237
           P +V+VVA +V  ++++FV+P F+++F  FGA+LPA T  V+ IS    S W++  G + 
Sbjct: 190 PAAVVVVAILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSWYIFLGAIV 249

Query: 238 GGIYFFLQAWKRNERVQRVMDRALLRVPIFGVLIEKSCVARWTRTLATMFAAGIPLVEAL 297
            G++ F++A + ++ V+  +D A+L++P  G ++ K  +AR+ RTLAT FAAG+PL++ L
Sbjct: 250 AGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGL 309

Query: 298 DSVGGASGNTVYGDATAKIQQEVSTGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHML 357
           +S  GASGN VY  A  KI+QEV  G  +  AM    LFP M+IQM  IGEESGS+D+ML
Sbjct: 310 ESAAGASGNAVYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNML 369

Query: 358 GKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFKLGQVV 409
            K A+ YE +VDD V GLSSL+EPI++V +GT++GG++V+MYLPIF++G+VV
Sbjct: 370 NKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVV 421