Pairwise Alignments

Query, 928 a.a., Protein translocase subunit SecA from Variovorax sp. SCN45

Subject, 908 a.a., preprotein translocase, SecA subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1052 bits (2721), Expect = 0.0
 Identities = 542/938 (57%), Positives = 692/938 (73%), Gaps = 40/938 (4%)

Query: 1   MATNFLTQIFGSRNDRLLKQYRKTVERINALEPEFEKLSDEALRAKTQEFKDRIAKGETV 60
           M    LT++FGSRNDR LK  +K V +INALE ++EKL+DE L+AKT EF++R+A G ++
Sbjct: 1   MFGKLLTKVFGSRNDRTLKGLQKVVNKINALEADYEKLTDEQLKAKTAEFRERLAAGASL 60

Query: 61  DALLPEAFATVREGSKRVMKMRHFDVQLLGGMALHNGKISEMRTGEGKTLTATLPVYLNA 120
           D+++ EAFATVRE SKRV +MRHFDVQLLGGM L + +I+EMRTGEGKTLTATLP YLNA
Sbjct: 61  DSIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA 120

Query: 121 LTGKGVHVVTVNDYLASRDATWMGRLYNFLGLTVGINLPQMPREEKQQAYGSDITYGTNN 180
           LTGKGVHV+TVNDYLA RDA     L+ FLGLTVGIN+  + +++K+ AY +DITYGTNN
Sbjct: 121 LTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQDKKDAYNADITYGTNN 180

Query: 181 EYGFDYLRDNMVYEPGDRVQRGLNYAIVDEVDSILIDEARTPLIISGQAEDHTDLYLAIN 240
           E+GFDYLRDNM + P +RVQR L+YA++DEVDSILIDEARTPLIISG AED ++LY+ IN
Sbjct: 181 EFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKIN 240

Query: 241 KVVPLLTKQEGE-ADPRTGEGVTVPGDFTVDEKTHQVFLTEDGHENAERILGEFKLLPEG 299
            ++P L +Q+ E ++   GEG     D+T+DEK  QV  TE G E  E +L E  +L EG
Sbjct: 241 TLIPNLIRQDKEDSEEYVGEG-----DYTIDEKAKQVHFTERGQEKVENLLIERGMLAEG 295

Query: 300 ASLYDPANITLMHHLNAALRARHLYHRDQHYVVQQGEVVIVDEFTGRLMTGRRWSDGLHQ 359
            SLY  ANI+L+HH+NAALRA  L+ RD  Y+VQ GEV+IVDE TGR M GRRWS+GLHQ
Sbjct: 296 DSLYSAANISLLHHVNAALRAHTLFERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQ 355

Query: 360 AVEAKEGVEIQAENQTLASITFQNYFRLYGKLAGMTGTADTEAYEFQEIYGLETMIIPPN 419
           AVEAKEGV IQ ENQTLASITFQNYFRLY KLAGMTGTADTEA+EFQ IYGL+T+++P N
Sbjct: 356 AVEAKEGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTN 415

Query: 420 RISKRDDQLDRVYKTTREKYEAAIQDIRECYERGQPVLVGTSSIENSEIIDGLLEKAGLP 479
           R   R D  D VY T  EKY+A I+DI++C ERGQPVLVGT SIE SE++  L+ K  +P
Sbjct: 416 RPMVRKDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIP 475

Query: 480 HQVLNAKQHAREADIVAQAGRTKMITIATNMAGRGTDIVLGGNIEKMIEAIEADEGRDEA 539
           HQVLNAK H +EA+IVAQAGRT  +TIATNMAGRGTDIVLGGN    I+A+E      +A
Sbjct: 476 HQVLNAKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALENPTPEQKA 535

Query: 540 AKKADIEHVRAEWTKDHEFVKSLGGLRIIATERHESRRIDNQLRGRSGRQGDPGSSRFYL 599
             KAD       W   H+ V + GGL I+ TERHESRRIDNQLRGR+GRQGD GSSRFYL
Sbjct: 536 KIKAD-------WQLRHDAVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL 588

Query: 600 SLDDPLMRIFAGDRVKAIMDRLKMPDGEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEY 659
           S++D LMRIFA DRV  +M +L M +GEAIE   V+R+IE+AQRKVEARNFDIRKQLLE+
Sbjct: 589 SMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEF 648

Query: 660 DDVSNDQRKVIYQQRNDILDAGDLTAQIAGLREGCFTDLVRQYVPSESVEEQWDLAALEN 719
           DDV+NDQR+V+Y QRN+++DA  +   I  +++   + ++ QY+P +SVEE WD+  LE 
Sbjct: 649 DDVANDQRQVVYAQRNELMDAESIADTIQNIQDDVISAVIDQYIPPQSVEELWDVPGLEQ 708

Query: 720 TLFTEWGIDMPLKKDVEAAEAIADEDIVEKVLQHANETFDAKVALIGQENFTQFERMVLL 779
            L  E+ + +P+++ ++  + + +E + E+++   ++ + AK  ++G     QFE+ V+L
Sbjct: 709 RLHQEFMLKLPIQEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVML 768

Query: 780 QSIDTHWREHLASLDYLRQGIHLRGYAQKQPKQEYKREAFELFGQLLDSVKNEVTRQLMT 839
           Q++D  W+EHLA++D+LRQGIHLRGYAQK PKQEYKRE+FELF QLL+++K++V   L  
Sbjct: 769 QTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLNTLKHDVISVLSK 828

Query: 840 VRVQSGEQLEEAAEALESRGENVTNITYTAPTETGEVEVRVDEESQRRAAAAGAGALSAE 899
           V+VQ+   +EE    +E+R                E + ++  + Q  AA A  G    +
Sbjct: 829 VQVQAQSDVEE----MEARRR--------------EEDAKIQRDYQHAAAEALVGGSDED 870

Query: 900 ALAFA---------RVGRNDPCPCGSGKKYKQCHGKLT 928
               A         +VGRNDPCPCGSG+KYKQCHGKL+
Sbjct: 871 DAIAAHTPMIRDGDKVGRNDPCPCGSGRKYKQCHGKLS 908