Pairwise Alignments

Query, 1261 a.a., ATP-dependent helicase HrpA from Variovorax sp. SCN45

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score = 1021 bits (2641), Expect = 0.0
 Identities = 569/1267 (44%), Positives = 785/1267 (61%), Gaps = 74/1267 (5%)

Query: 3    AISAHQVVIVCGETGSGKTTQLPKIALALGRGKLNAEPGKGRLIGHTQPRRIAASSVAKR 62
            AI+ HQVVIV GETGSGKTTQLPKI   LGRGK         LIGHTQPRR+AA SVA R
Sbjct: 99   AIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYG-------LIGHTQPRRLAARSVANR 151

Query: 63   IAEELKTPLGDVVGFKVRFQDRLSRDASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHE 122
            IAEE++T LG  VG+KVRF D++S    +KLMTDGILLAE Q D  L  YDT+IIDEAHE
Sbjct: 152  IAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIIIDEAHE 211

Query: 123  RSLNIDFLLGYLREILPRRPDLKVIVTSATIDADRFAQHFASAKGPAPTIMVSGRTFPVE 182
            RSLNIDF+LGYL+++LPRRPDLKVI+TSATID +RF++HF++A    P I VSGRT+PVE
Sbjct: 212  RSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNA----PIIEVSGRTYPVE 267

Query: 183  QRYRPF----EESREHDLNDAIADAVDELWRDPHNAGDILIFLPGEREIREAADHLRRHV 238
             RYRP     +   + D  + I  AVDEL  +    GDILIF+ GEREIR+ AD L +  
Sbjct: 268  VRYRPLAGDDDSESDRDQLEGIFQAVDELCDE--GLGDILIFMNGEREIRDTADALSKRN 325

Query: 239  SHQPLFRSAEVLPLFARLSGPEQDRIFESHNGRRIVLATNVAETSLTVPGIRYVIDTGTA 298
                  R  E++PL+ARLS  EQ++IF+ H GRRIVLATNVAETSLTVPGI+YVID GTA
Sbjct: 326  -----LRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTA 380

Query: 299  RVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGICIRLYDEKDFEGRPRFTDPEIL 358
            R+ RYS+R+KV++L +EPISQA+ANQR GRCGR   GICIRLY E+DF  RP FTDPEIL
Sbjct: 381  RISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEIL 440

Query: 359  RSSLAGVILRMKSLRLGDVARFPFLEAPSPRAIADGYQLLNELGAVDDA-----NELTHT 413
            R++LA VIL+M +L LGD+  FPF+EAP  R I DG +LL ELGA++D        LT +
Sbjct: 441  RTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTES 500

Query: 414  GAELSRLPLDPRVGRMILEARARGALEEVLIIASALSVQDVRDRPMDAQQQADQAHSKFD 473
            G +L+RLP+DPR+ RM+LEA   G L+EV+IIASALS+QD R+RP D QQ AD  H +F+
Sbjct: 501  GKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFN 560

Query: 474  DEKSEFSGYLRLWKWIADARGGHGDTHKLSNRQYEQLLRQNFINIRRVREWRDIHSQLLT 533
             E S+F   + LW +I   +        L++ Q+ +  + +++N  RVREW+D+++QL  
Sbjct: 561  HEDSDFLTLVNLWHYIGQQQKA------LTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQ 614

Query: 534  VVTEHKWRINAEPAGYEPLHLSMLAGLLGNVGWKLEDDEAYLGARGIKFYKHPGAHLKKK 593
               E  +++N EP  Y  +H ++L GLL ++G K ++   Y GAR  +F   P + L KK
Sbjct: 615  STREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKK 674

Query: 594  PGRWIVAAELVETTRLFGRGVANIEPQWLEQVAGHLLKKQLLDPHWEKKGAQVSALERAT 653
              +W+++AELVET++L+ R VA IEP W+E +A HL K+   +PHW KK A V A E+  
Sbjct: 675  QPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVM 734

Query: 654  LYGLVVYSGRRVDFTKVDPVAAREIFIREALVGGQWESKFPFLTANRKLVREVEGLEHKS 713
            LYG+ +   R V++  +DPV +REIFIR ALV G WE+K  F   NR L+ EVE LEHKS
Sbjct: 735  LYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKS 794

Query: 714  RRQDVLVDDELIFVFYDAQLPADVASGITFENWYRHASREQPRLLYLTRDELMRHQAAGI 773
            RR+D+LVDDE +F FYD ++  +V SG  F+ W++ ASR+ P LL   ++ L +  A+ I
Sbjct: 795  RRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHI 854

Query: 774  TTQSFPPTLRLGGVDCAASYLHEPGDAKDGLTVSVPLFVLNQVSEERCEWLVTGMLKDKI 833
            T   +P     G +    SY  EPG+  DG+TV +PL +LNQV     +W + G+  + +
Sbjct: 855  TDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELV 914

Query: 834  QALLKSLPQRPRSRLVPLPESAGKLAEELSVPELFGTGSLTDVLLKRVRDMTSIDVKRAD 893
             +L+KSLP+  R   VP P  A      ++  E+     L D + K +R MT + V R D
Sbjct: 915  VSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEM----PLLDAMEKELRRMTGVTVLRED 970

Query: 894  FKLDMLPPHLFMNLRVIDEHGRQLGMGRNLGALKAELGAQARGAFQALAGLNVKASPEKK 953
            +KLD LP HL +  R +D   R+L    +L  LK  L  + +     +A  ++    E++
Sbjct: 971  WKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDI----EQR 1026

Query: 954  DAASSDQGSKTPAKASSAPAPAALPAGQRYTSWTFGELPELMEVRRGSQSLIGFPALRDE 1013
            D                              +W+FGELP++ + +RG   +  +PAL D+
Sbjct: 1027 D----------------------------LHTWSFGELPKVYQQKRGGFEVRAYPALVDK 1058

Query: 1014 GDAVTIEVFDEPAVAAAKHRAGLRRLFALQLKDALKYLEKNIPDLQKMSVAYMPLGTSEE 1073
             D+V I++F+      +  RAG RRL  L +   +KYL  N+P+  K+ + + P G   +
Sbjct: 1059 KDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLD 1118

Query: 1074 LRTQIIDVAIDRAFLQE-PLPTDEFAFKKRLDEGRGRLTLIANEVARLASTILIEYAAAA 1132
            L    I   +D+   +   +  +  AF+   +  R  L     E+A+   TIL       
Sbjct: 1119 LIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNIN 1178

Query: 1133 RKIKDTK--IQPDAVQDAAQQLQRLVGKRFIADAPWTQLQHFARYLKAIVLRLDKLRADP 1190
            +++K         A+ D   Q++ L+   F  +  W +L    RY++AI  R++KL  DP
Sbjct: 1179 KRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDP 1238

Query: 1191 ARDAAKLAELKPQDQRYWRLVAE-RKGV-VDDRMLEFRWLLEELRVSFFAQELRTPQPVS 1248
             +D   + +++    +Y  L+ +  KG+ + D + E RW+LEELRVS+FAQ+L TP PVS
Sbjct: 1239 NKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVS 1298

Query: 1249 VKRLDKA 1255
             KR+  A
Sbjct: 1299 DKRIINA 1305