Pairwise Alignments

Query, 586 a.a., Sensory histidine kinase BaeS from Variovorax sp. SCN45

Subject, 449 a.a., sensor protein CpxA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  108 bits (271), Expect = 4e-28
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 24/304 (7%)

Query: 287 LCGLGFALVLSWLLAR--RWF--RPIDELTQAAQDVAQGRLSTRV---AVQGSDELALLG 339
           L  L  A++LS LL     W   +P+  L ++A  +A+G LS RV     Q +DE+  L 
Sbjct: 160 LLTLSLAILLSGLLCALLAWHLGKPLRSLKKSADALAEGDLSNRVDKTTTQRNDEIGQLA 219

Query: 340 KTFNDMAQRLDTVEASRRAWLADAAHELRTPLAAMRAEIE-ALQDGVRTFDERTALRLHR 398
             FN MA  ++ +  +++  + D +HELRTPL  ++  +  A + G +T +     R+  
Sbjct: 220 TAFNSMADSIEAMVKNQQRLMGDISHELRTPLTRLQLSLALARKKGQQTTETD---RIAY 276

Query: 399 QVIRLGQLVDDLRSSMREPQSDLLTTTVFPLS-LLKEALDHTRDRFAKRGIVVDRHAVDH 457
           +  +L QL+ +L    R   S   T     L+  L + LD       ++G  +     + 
Sbjct: 277 EAEQLEQLIAELLELSRVKLSTNETKVCLGLAESLSQVLDDAEFEADQQGKKITIDIDEA 336

Query: 458 VTASAQPVIDGNAHRLHQVFMNLLENTLAYTDEGGKLRLDVIVEGAWTGNCLTLLFDDSA 517
           +  S  P        L +   NLL N + Y       + D+ +  + T   + +   D  
Sbjct: 337 IELSHYP------KSLSRAIENLLRNAIRYA------KSDIHLHASQTSGQVQITIKDDG 384

Query: 518 PGVPDEELPRLFDRLFRGETSRSREHGGSGLGLSICRATIEAHGGTIEASASPLGGLRVT 577
           PG+   EL  +F   +R +++R RE GG GLGL+I  A I AH G I+A      GL V 
Sbjct: 385 PGIDPAELESIFKPFYRPDSARQRESGGWGLGLAITEAAISAHKGKIKAENREPHGLEVN 444

Query: 578 ITLP 581
           I+LP
Sbjct: 445 ISLP 448