Pairwise Alignments

Query, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 149 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

 Score =  118 bits (296), Expect = 4e-32
 Identities = 65/147 (44%), Positives = 93/147 (63%), Gaps = 7/147 (4%)

Query: 26  WLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQGDWQLREPRAYLTVVAKRLLANLYRR 85
           WLR+ +  +  A DL+QDTF+R+L   +           REPRA+L  +AK LL + +RR
Sbjct: 3   WLRRNVACSQRAEDLSQDTFVRLLGREELKAP-------REPRAFLVAIAKGLLFDYFRR 55

Query: 86  RSLEQAYFEALSALPEPQAPSPEQQAIILETLQEIDAMLDGLAPPVRRAFLMAQLEGLGY 145
            +LEQAY   L  +PE + PS E+Q IILE L+ ID +L  L+   R AFL  +L+GLG+
Sbjct: 56  AALEQAYLTELMLIPEAEQPSVEEQQIILEDLKAIDRLLGKLSSKARAAFLYNRLDGLGH 115

Query: 146 AEIAATLGVSERTVKRYMAEAMARCIL 172
           AEIA  LGVS   V++Y+A+ + +C +
Sbjct: 116 AEIAERLGVSVPRVRQYLAQGIRQCYI 142