Pairwise Alignments

Query, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog from Pseudomonas stutzeri RCH2

 Score =  191 bits (484), Expect = 7e-54
 Identities = 99/175 (56%), Positives = 125/175 (71%), Gaps = 6/175 (3%)

Query: 1   MAADSVLHHPHIQTLYCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQG 60
           MA + ++    +  LY DHHGWL GWLR++LG +  AADLAQDTF+R++   +D      
Sbjct: 1   MATEGMVRQQMLHRLYSDHHGWLNGWLRRQLGCSQRAADLAQDTFVRVMTKDEDMGA--- 57

Query: 61  DWQLREPRAYLTVVAKRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEI 120
              +REPRAYL  +AK LL N +RRR +EQAY +AL+  PE  APSPE QA+I+ETL +I
Sbjct: 58  ---IREPRAYLHTIAKGLLINHWRRRQIEQAYLDALALQPELVAPSPESQALIVETLLQI 114

Query: 121 DAMLDGLAPPVRRAFLMAQLEGLGYAEIAATLGVSERTVKRYMAEAMARCILLAA 175
           DAML  L   VRRAFLM+QL+G+ YA IAA LGVSER VK+YMA+AM  C+LL A
Sbjct: 115 DAMLAQLPAKVRRAFLMSQLQGMTYAAIAAELGVSERMVKKYMAQAMLHCLLLVA 169