Pairwise Alignments

Query, 373 a.a., Lipopolysaccharide export system permease protein LptF from Variovorax sp. SCN45

Subject, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (268), Expect = 4e-28
 Identities = 83/326 (25%), Positives = 148/326 (45%), Gaps = 7/326 (2%)

Query: 1   MLFHSSLRKELSRSFGATLVVLVTIVMTMMLIRTLGLASKGSVNPQEVFLVMAYTVLGYM 60
           M+    L +E  +S  A   VL  + ++   IR L  AS G +    +  ++   +    
Sbjct: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60

Query: 61  PTILSLSLFIAIVGTLSRMYRDSEMVIWFSSGRGLMDFVKPLFRFAWPVLILIAVMALVG 120
             +L LSL+I I+ T  R+Y +SE+ +  ++G G    ++     A     + A  AL  
Sbjct: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120

Query: 121 WPWANSQTIGMRKQYEQRSDIERVAPGEFRESAGRVRVFFIDKETPDNSKATNVFIWSVE 180
            PW+  +   + +Q+   + ++ +  G F+ S     V FID    +N K  NVF+  + 
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFID--NIENRKLYNVFVAQLA 178

Query: 181 RNMQITTS---ARSGSIENIGDSRYLL-LNNGQRLEQPMANTGLKISEFKTYGTRAGGSD 236
               I  S   + SG ++ + D R ++ L +G R E         I+ F +Y    G  +
Sbjct: 179 PRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQRE 238

Query: 237 GLTNDATPSRARTTLSLLTDPSDMSRGELAWRIGMLLTAVNFVLLALNVSSANPRVGRSG 296
            + +      A  TLSLL +    ++ EL WRI +++      +L + +S+ NPR GR  
Sbjct: 239 -VKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFA 297

Query: 297 NLLLALFAFVVYYNMLNLGQSWISSG 322
            +  A+  ++ Y+  L+  +S I  G
Sbjct: 298 KMGPAILIYLTYFLALSATKSAIEDG 323