Pairwise Alignments

Query, 564 a.a., Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily from Variovorax sp. SCN45

Subject, 420 a.a., Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) from Shewanella loihica PV-4

 Score = 64.3 bits (155), Expect = 9e-15
 Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 57/307 (18%)

Query: 75  MRIASTSKHFTAMSILLLAEDGLLDVDDAVQKHLPEMPQLSANGPTLRHLLTHTSGWRGH 134
           +R+ S +K +    IL + ++G L ++D V  H   +P  S    T+  LL+  SG   +
Sbjct: 110 LRVGSNTKTWVGTIILQMVQEGKLQLEDPVAMHWTGVP--SGEQITIAQLLSMESGLHNY 167

Query: 135 DELWAIAHGLTFTP----PGPGLPAMARQSELNFEPGTHMVYSNGGYFLLAKIVERVSGQ 190
               A+   L   P    P   L  ++    L+F PGT   YSN    LL  I +++   
Sbjct: 168 TTTLALNQILDQDPAYAWPQAELLKLSFDYPLDFTPGTDFGYSNTNTVLLGLIAQKLDDS 227

Query: 191 SFDDFLKARLFGPLGMPDT---------------------ASVVTDLDVVP------GLA 223
           +  + ++ RLF PLGM  T                      +V+T    +P         
Sbjct: 228 TLPEIMQRRLFAPLGMTQTLFPEITDNVLPEPYAHGYMYGTNVLTMDSALPEAMQQEARD 287

Query: 224 GLYIP------SPRGGWQRGLYPCELDGGGSLVSTVDDMLRWLAHMRSSEKTVGSAKSWA 277
           G+ +P      +P  GW            G+ +ST  ++L W+  +   +      +   
Sbjct: 288 GVIMPGDQTEANPSWGW----------AAGAGISTARELLVWVEALVRGKLLNEEMQKLR 337

Query: 278 LLS-EPTTLSSGSKVTYGFGLARHPYRGVEIVHHAGAVLGAQSQMLSVPSHGLDIIVMVN 336
           L S +P    + +   YG G+A+       +  H G + G  S M   P + + ++V  N
Sbjct: 338 LASVKPIDPDNPNTAYYGLGIAKFGL----LYGHTGELPGYNSFMGHDPDNKVTLVVWTN 393

Query: 337 GAAIAPS 343
              +APS
Sbjct: 394 ---LAPS 397