Pairwise Alignments

Query, 405 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 372 a.a., Extracellular ligand-binding receptor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  154 bits (390), Expect = 3e-42
 Identities = 112/370 (30%), Positives = 185/370 (50%), Gaps = 17/370 (4%)

Query: 37  APAAAPAPAPAGDTLVVKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIGDKTAK 96
           A A    PA A DT  +K G     SG +A  G      AK+  + +NAKG  +G +   
Sbjct: 14  AVAVMACPAFAADT--IKFGVAGAHSGDLASYGLPTVNAAKLVAKMINAKGGVLGKQV-- 69

Query: 97  FELVAEDDAGDPKQGTAVAQKLVDEKVNGVVGHLNSGTTIPASKLYSDAGIPQISPSATN 156
            E++ +DD   P+  T  A KLV +  N V+GH+ SG T  A  +Y +A I  +SPSATN
Sbjct: 70  -EVIPQDDQCKPELATNAATKLVSDGANVVLGHICSGATKAALPIYKEANIVLMSPSATN 128

Query: 157 PKYTRQG-FKTTFRVVADDTQLGGTLGKYAVETLKGKNIAVIDDRTAYGQGVAEEFEKSA 215
           P  T+ G +   FR +A D Q       + ++ L  K IAV+ D+  YG+G AE  ++  
Sbjct: 129 PALTQSGDYPNFFRTIASDDQQAKLGVDFTIDKLGKKKIAVLHDKGDYGKGYAEYAKQFV 188

Query: 216 KAAG-ATIVGHEFTTDKSTDFNAILTKLKSAKPDVLFFGGMDAVGGPMLKQVKQLGLNVK 274
           + +G  T+V  E  T  + D++A++ K++++  + + FGG       +++Q+++  +++ 
Sbjct: 189 EQSGKGTVVLFEGVTPGAVDYSAVVQKIRNSGAEAVMFGGYHPEASKIVQQLRKKRMDLP 248

Query: 275 FMGGDGLCTGELPKLAG-DAIGEDMVVCAEAGGVDG--DFKQPLEDFKAKFKTKNGVEVQ 331
           F+  DG+      K+AG DA G   V  + +  V     +K+ +E    +F    G E  
Sbjct: 249 FVSDDGVKDDTFIKVAGKDAEG---VYASSSKDVSALPLYKEAIEAHVKEF----GAEPG 301

Query: 332 IYAPYVYDAVNVLAEAMVKAGSSDPEKYLPEVGKVQYKGVTGPIAFDEKGDIKNGALTLY 391
            +    Y A   L  A+ KAGS+D  K +  +     +   G I FD++GD +    ++Y
Sbjct: 302 AFYKEAYAASLALLNAIEKAGSTDSAKIMNALRTEFVETSVGKIKFDKRGDAEGVGFSMY 361

Query: 392 TYKGGARTQI 401
             K G   ++
Sbjct: 362 QVKNGKYVEL 371