Pairwise Alignments

Query, 560 a.a., DNA repair protein RecN from Variovorax sp. SCN45

Subject, 553 a.a., recombination and repair protein (RefSeq) from Shewanella loihica PV-4

 Score =  360 bits (924), Expect = e-104
 Identities = 209/558 (37%), Positives = 322/558 (57%), Gaps = 17/558 (3%)

Query: 3   LRRIALRDFVIVRSLELDLSGGFTVLTGETGAGKSILIDALQLALGNRADAGAVREGAER 62
           L ++++ +F IVR LELD   G T +TGETGAGKSI IDAL L LGNRADA  VR GA +
Sbjct: 2   LCQLSINNFAIVRFLELDFKSGMTSITGETGAGKSIAIDALGLCLGNRADANTVRPGASK 61

Query: 63  LDVSAEFDAD--PALATWLDEGGFEAGDALLLRRTVDLQGRSRGWINGSPATATQLRELG 120
            +VSA F  +  P    WL++   E  D  +LRRT+   GRSR +ING+P    Q+R LG
Sbjct: 62  AEVSARFALNDIPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLNQMRALG 121

Query: 121 DRLLDIHGQHAWQSLTRPDAVRGLLDAYAGVRT--DALDAAWQGWRQALSALEHARSAQD 178
            +L+ IHGQHA  ++ + +    LLD+YA  +   +A  A++Q ++     L   + +Q 
Sbjct: 122 QQLIGIHGQHAHHAMLKSEHQLTLLDSYANHKMLLEACSASYQRFKLIQKELSQLQQSQH 181

Query: 179 SLQRERERLQWQISEVAKLAPGADEWEELSTNHSRISNAQALIDAAQGASQALEDEDNGA 238
                ++ LQ+Q+ E+ + A G +E++E+   H +++N  ALI A Q     L+D + GA
Sbjct: 182 ERIARKQLLQYQVEELDEFALGEEEFDEIEAEHKKLANGTALIQACQRTLYLLQDNEEGA 241

Query: 239 L-SALSRAAALLKNCEHIEPEFRNLGEVLASCVAQASDAAHSLHGYLRDAEADPQSLAEL 297
           + S L+ +    +  E  +PE + +G +L   + Q  +++  L  YL   E DP+  A L
Sbjct: 242 IESLLNMSLDQAQELEGYDPELKGVGNMLNDALIQVQESSSELQRYLDKLELDPEHFAAL 301

Query: 298 DERMGLWMSLARRYKRTPAELPALLAGWQSELQALDAQSD-LDGLERAEQSAQQAYMKEA 356
           ++R+   M LAR++     +L         EL  LD+  + LD + +  +S +++++  A
Sbjct: 302 EQRLSKIMMLARKHHVNAKDLYQHHQALSQELSELDSDEEKLDEIAQQLESCRESFIAHA 361

Query: 357 KALGKSRKQAAPRLAQAVTEAMQGLGMKGGRFEVDLQ---PLAQPGRAGLEEIAFLVAGH 413
           + L +SR++ A  L + VT ++  L M  G+F +D+Q    +  P   G + + F V  +
Sbjct: 362 QKLSQSRQRYAKELDKQVTRSIHELSMPKGKFIIDVQFNPEMMSPN--GCDTVEFQVTTN 419

Query: 414 TGSTPRAIGKVASGGELSRIALAIAVTTSQLGAAQTLIFDEVDAGVGGAVAETVGRLMKQ 473
            G   + I KVASGGELSRI L I V T++  A  TLIFDEVD G+ G  A  VG++++ 
Sbjct: 420 PGQPLQPIAKVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGKMLRA 479

Query: 474 LGRDRQVLAVTHLPQVAACADHHLVVAKRQTAAAGKEGPRTESGVSRLDEDNRAKEIARM 533
           LG   QVL VTHLPQVA     H+ V K+  A       +TE+ +  LD+  R +E+AR+
Sbjct: 480 LGESTQVLCVTHLPQVAGNGHQHMFVNKQSKAG------QTETSMVPLDKGQRIEELARL 533

Query: 534 LGGEKVSQTSLAHAREML 551
           LGG+ ++  +LA+A+E+L
Sbjct: 534 LGGDVITNNTLANAKELL 551