Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 328 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  218 bits (556), Expect = 1e-61
 Identities = 125/317 (39%), Positives = 192/317 (60%), Gaps = 8/317 (2%)

Query: 5   LFKRLATLIGTLIGASVIVFLVLEILPGNAAQMLMGP--DASPEAVAALATKLGLDQPAW 62
           L + L   + T++G  ++ F +L++ PG+AA +L G    A+ E+VAAL  + GLD P  
Sbjct: 11  LRRTLLQAVPTILGIVILNFFLLQLAPGDAADVLAGEAGSATEESVAALRARFGLDSPVL 70

Query: 63  TRYWHWIGGLLTGNLGDSYAYSSPVLDLILERLALTMPLALLAMFFTTVIALLVGVTAAA 122
            +   ++G L   +LG S  Y  PV DLI +RL  T+ L  +A+F   ++ +++G   A+
Sbjct: 71  EQLATYLGNLAQFSLGFSPRYGMPVADLIAQRLPGTLTLMAVALFIAILLGVVLGSLMAS 130

Query: 123 RHNKLGDVGLMGMAQVGIAIPNFWFAILLILVFSVKLQWFSAGGFEGWGD---GF---FS 176
              ++ D  L   + +  +IP+FW  ++LI++FSVKL W  +GG    G    GF     
Sbjct: 131 FAGRIPDRLLSIFSLLFYSIPSFWIGLMLIVLFSVKLGWLPSGGAATIGSQLKGFPALLD 190

Query: 177 GIKSLLLPALSLAVVQAAILARITRSAVLEVMREDFVRTARAKGVSQRMVLWTHVLRNAM 236
             + ++LPA SLA+   AI AR+TR+A+LEV   DFVRTA AKG++   V   H+LRNA+
Sbjct: 191 KARYMVLPATSLALFYVAIYARLTRAAMLEVKNHDFVRTAYAKGLTPFGVTARHILRNAL 250

Query: 237 IPVITVMGMQFSELLAGTIVVENVFYLPGLGRLIFQAISNRDLIVVRNCVMLLAAMVVIV 296
           IP+ T+ GM    +L G +VVE V+  PGLGRL F+A+  RD  V+   ++L + +V+I 
Sbjct: 251 IPITTMAGMHIGGMLGGAVVVETVYSWPGLGRLAFEAVMGRDFTVLLGILLLSSLLVIIA 310

Query: 297 NFVVDVLYAVIDPRIKA 313
           N  VD+++A +DPRI A
Sbjct: 311 NAAVDLVHAWLDPRIGA 327