Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  220 bits (561), Expect = 3e-62
 Identities = 111/315 (35%), Positives = 197/315 (62%), Gaps = 9/315 (2%)

Query: 1   MSLFLFKRLATLIGTLIGASVIVFLVLEILPGNAAQMLMGPD---ASPEAVAALATKLGL 57
           M  F  +R+  +I T++  ++++F++  ++PG  A  L       A P+ +A L  + GL
Sbjct: 1   MLRFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGL 60

Query: 58  DQPAWTRYWHWIGGLLTGNLGDSYAYSSPVLDLILERLALTMPLALLAMFFTTVIALLVG 117
           ++P   R+  ++  L   +LG S+    PV+DLI +R+  ++ LA+ AM F  VI++ +G
Sbjct: 61  NKPLMERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLG 120

Query: 118 VTAAARHNKLGDVGLMGMAQVGIAIPNFWFAILLILVFSVKLQWFSAGGFEGWGDGFFSG 177
             AA R   + D   M  A  G+++P FW  +L++ +F+++L W  + G+   GDG F  
Sbjct: 121 FVAALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPSFGY---GDGSF-- 175

Query: 178 IKSLLLPALSLAVVQAAILARITRSAVLEVMREDFVRTARAKGVSQRMVLWTHVLRNAMI 237
            ++L+LPA++L V   A+LAR TR+ VL+V+  DF+RTA +KG+S+  V+  HV RNA++
Sbjct: 176 -RNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGMSEAKVVRWHVARNALV 234

Query: 238 PVITVMGMQFSELLAGTIVVENVFYLPGLGRLIFQAISNRDLIVVRNCVMLLAAMVVIVN 297
            ++T +G+QF  L+   +V+E +F  PG+G L+  ++++RD+ VV+  ++++    +++N
Sbjct: 235 LIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDIPVVQGTILVIVLWFLVIN 294

Query: 298 FVVDVLYAVIDPRIK 312
             VD++YA IDPRIK
Sbjct: 295 TAVDLIYAAIDPRIK 309