Pairwise Alignments

Query, 495 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 530 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a

 Score =  134 bits (338), Expect = 6e-36
 Identities = 140/533 (26%), Positives = 225/533 (42%), Gaps = 66/533 (12%)

Query: 4   RRTLLTTAGATVALATPLAGMAQGRKDAIVIGMALEPPGLDPTSGAAAAIAEVVQYNILE 63
           R+TL  T+   +    P A  A      +V      P G D     ++   +  +  I  
Sbjct: 2   RKTLAMTSCLGLLALAPFAQAASN----LVFCSEASPAGFDGAQYTSSTDNDASE-PIYN 56

Query: 64  TLTKIN-ADGSVTPLLADSWEVSPDLKTYTFKLKRGVKYQNGE------PFNAAAVKFSF 116
            LT+    D +V P LA SW+ S D   YTF L+ GVK+ + +       FNA  V F+F
Sbjct: 57  RLTEFKQGDTTVVPALATSWDTSEDGLVYTFHLREGVKFHSNKNFKPSRDFNADDVLFTF 116

Query: 117 DRAGSEKSTNKDKRTFANLSTQVVDDYTVVVINKEI------DP----------DLPFV- 159
           +R        K    F          +T + +NK+I      DP          D  F+ 
Sbjct: 117 NRM------LKPDHPFRVAYPTEFPYFTGMGLNKKIKSVEKTDPLTVVFTLNTVDAAFIQ 170

Query: 160 ------LGQATAVIVEPKSAEGNAT----KPVGTGPYKLDNWAKGSSITLSKWEGFRSPA 209
                  G  +A   E   A+G+      +P+GTGP+    + K S I     + F  P+
Sbjct: 171 NIAMNFAGILSAEYAEQLMAKGDVRDINQQPIGTGPFVFQRYQKDSQIRYKGNKEFWDPS 230

Query: 210 TAKINKVTFRFISDTAAQAAAVLSGDIDVFPRIGTRVVPQFKMNPQFQVILAGSRAKTIL 269
             KI+++ F  ++D +A+   + + +  V        +   K +   QVI         +
Sbjct: 231 RVKIDQLIFAIVTDASARMQKLKANECQVSVNPRPADLASLKADKSLQVIEKPGFNLGYI 290

Query: 270 SINNRKKPLDDVRVRRAILAAIDRKAVIEGAADGFGVPIGSHYVPGAAGYVDTTGINPFD 329
           S N R +PL  ++VR+A+  A+++KA+I     G G    +   P    Y D+    P+D
Sbjct: 291 SYNVRHEPLGKLQVRQALDMAVNKKAIINAVYQGAGQLAVNAMPPTQWSYDDSIKDAPYD 350

Query: 330 IEKAKKLLAEAGVKTPLELKMTLPP-----PPYARQGGEVIVAELAKIGIVVKVQNVEWA 384
            EKA+ LL  AGVK   EL +   P      P A+   E++ A+ AK+GI VK+ + EW 
Sbjct: 351 PEKARTLLRAAGVKEGTELTLWAMPVQRPYNPNAKLMAEMLQADWAKVGIKVKIVSYEWG 410

Query: 385 QWLSGTYGNKDYDLSIVSHV-EPFDLGNYAKSDY---------YWGYQSKAFDTLFDKIK 434
           ++L  T  N ++D+S++    +  D  N+  + Y         Y  +  K +D L     
Sbjct: 411 EYLKRT-KNGEHDISLIGWTGDNGDPDNWLGTLYSCDAIGGNNYSMWCDKKYDDLIKDAV 469

Query: 435 TTANTAERNKLLGDAQKML-----ATDAANGFLYQPQFPTVAKKNVKGIWKEN 482
            T +  +R +L   AQ+ L      T  A+  + QP    V   +V    + N
Sbjct: 470 ATTDRVKRTELYQRAQRYLKEQVPITPIAHSTVNQPLRAEVRDFHVSPFGRNN 522