Pairwise Alignments

Query, 313 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 80/287 (27%), Positives = 148/287 (51%), Gaps = 26/287 (9%)

Query: 26  NLDA---YISAANRLPMLTLEEEQGFARKLRDQNDLESAGALVLSHLRLVVSISRQYLGY 82
           +LDA   Y+S     P+LT EEE  +AR+   + D  +   ++ S+LRLVV ISR+Y   
Sbjct: 55  SLDATQMYLSEIGFSPLLTAEEEVLYARRAL-RGDEAARKRMIESNLRLVVKISRRYSNR 113

Query: 83  GLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYILKNWRMVKVATTKA 142
           GL   DLI+EGN+GL++AV++FDP++G R  +YA  WI+  I   ++   R +++     
Sbjct: 114 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHV 172

Query: 143 QRKLFFNLRSMKQGFKADSAAADNGTHRETLSPDEVSQMATRLNVKPEEVLEMETRLSGG 202
            ++L   LR+ ++        +    H  T  P+E++    R      ++L +  R+S  
Sbjct: 173 VKELNIYLRTARE-------LSQRLDHEPT--PEEIALELDRPVDDVTKMLRLNERISSV 223

Query: 203 DVMLDPGPSDDGEEAFGPIAYLADATQEPTALLESQQRDRLSSDGIATALEALDDRSRRI 262
           D  +      DG++A   +  L D+     A  E   +D    + +   L+ L+ + + +
Sbjct: 224 DTPI----GGDGDKAL--LDILPDS---HNADPEFSTQDDDIRESLLNWLDELNPKQKEV 274

Query: 263 VEERWLKVNDDGSGGMTLHDLAAVYGVSAERIRQIEVAAMKKMKKAL 309
           +  R+  +  + S   TL ++     ++ ER+RQI+V  ++++++ L
Sbjct: 275 LARRFGLLGYEPS---TLEEVGREINLTRERVRQIQVEGLRRLREIL 318