Pairwise Alignments

Query, 313 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

Subject, 969 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 92.8 bits (229), Expect = 3e-23
 Identities = 75/284 (26%), Positives = 140/284 (49%), Gaps = 31/284 (10%)

Query: 24  LGNLDAYISAANRLPMLTLEEEQGFARKLRD-QNDLESA-GALVLSHLRLVVSISRQYLG 81
           +  L A +   N+   + L   Q    K++  Q D+ +A   ++  +LRLV+S++ +YLG
Sbjct: 695 INRLQAQMQNINQKTGIDLYSLQDIGSKIKKLQRDISAARDEMITFNLRLVLSVANKYLG 754

Query: 82  YGLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYILKNWRMVKVATTK 141
            GL   DL+QEGN+GLMKAV++FD  +G +  +YA  WI+  I   I    R++++    
Sbjct: 755 RGLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARIIRIPV-- 812

Query: 142 AQRKLFFNLRSMKQGFKADSAAADNGTHRETLSPDEVSQMATRLNVKPEEVLEMETRLSG 201
                      + +      +A+   TH+    P ++S+++  L++ PE  +E   ++  
Sbjct: 813 ----------HVNESLNKLISASKVLTHKFGRGP-KISELSLILSM-PETKVENLKQI-- 858

Query: 202 GDVMLDPGPSDDGEEAFGPIAYLADATQEPTALLESQQRDRLSSDGIATALEALDDRSRR 261
             ++++P    D         Y+  A   P   +    RD      I   L+ L D+ ++
Sbjct: 859 --LVMEPVAEAD----HNTNGYVDWAAMSPEEEIIDDDRD----TNIKDLLKGLTDKEKK 908

Query: 262 IVEERWLKVNDDGSGGMTLHDLAAVYGVSAERIRQIEVAAMKKM 305
           ++E   L+   + +  +TL ++   + V+ ERIRQIE  ++KK+
Sbjct: 909 VLE---LRFGINAATELTLEEVGQQFDVTRERIRQIEAKSLKKL 949