Pairwise Alignments

Query, 546 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 841 a.a., cytochrome c oxidase subunit I from Sinorhizobium meliloti 1021

 Score =  401 bits (1030), Expect = e-116
 Identities = 210/521 (40%), Positives = 302/521 (57%), Gaps = 12/521 (2%)

Query: 7   PHGHAVPGGHAHDEHHDHHAPTGWRRWVFATNHKDIGTLYLLFSFTMLMVGGVLALLIRA 66
           P+    P G   +       P GWR  V A N+  IG LYL  +F   ++ G+LA+++R 
Sbjct: 5   PNPDPRPEGEVRELERIWATPRGWRL-VTAVNNTVIGLLYLGVAFLFFLMAGLLAVVMRT 63

Query: 67  ELFQPGLQLVNPELFNQFTTMHGLIMVFGAIMPAFVGFANWMIPLQVGASDMAFARMNNF 126
           +L     +LV+ +L+NQ  T+HG  M+F   +PA       ++P  + A D+ F R++ F
Sbjct: 64  QLALGDNRLVDQDLYNQMFTVHGTTMMFLFAVPAVEALGVMLLPQMLAARDLPFPRLSAF 123

Query: 127 SFWLLIPAALMLVGSFFMPGGAPAAGWTLYAPLTLQM---GPSMDAGIFAMHIMGASSIM 183
           + W  +   L+   + F    AP  GW +Y PLTL     G + D  +  +  +  S+I 
Sbjct: 124 AIWAYVVGGLVFFSTIFYDL-APKGGWFMYPPLTLMEYSPGDNADFWLLGIGFIEISAIA 182

Query: 184 GSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSF 243
           G++ I+V  L  R PGM+L KMP+F WT LI A +++   P +  A  M   +R FG  F
Sbjct: 183 GAVEIVVGALRTRPPGMSLAKMPIFAWTMLIFASMIMFAFPAVILATMMLEIERAFGWPF 242

Query: 244 FNPAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQVVPAFARKKLFGYASMVYATSSI 303
           F  A GGDP+++QH+FWFFGHPEVYI+ LPA G++S +VP  AR  L GY  +V A    
Sbjct: 243 FTAALGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVSMMVPTMARTPLVGYHLIVVALIGT 302

Query: 304 AILSFIVWAHHMFTTGMPLTGQLFFMYATMLIAVPTAVKIFNWIATMWQGSMTFE--TPM 361
              SF +W HHMFTTG+P     FF  A+M +AVP+ +++F+WIAT+  G   F   T  
Sbjct: 303 GFFSFGLWVHHMFTTGIPALSLAFFSAASMAVAVPSGIQVFSWIATIAAGRERFRITTAS 362

Query: 362 LFAVGFIFVFTMGGFTGLILAVAPIDTQLQDTYYVVAHFHYVLVAGSLFAMFSGFYYWVP 421
           LF +GF+F+FT+GG TG+++A+ P D Q+ DTY+VVAHFHYVL+ G +F +F+  YYW+P
Sbjct: 363 LFILGFLFIFTLGGLTGVMVAMVPFDHQVHDTYFVVAHFHYVLIGGFVFPLFAAIYYWMP 422

Query: 422 KWTGVMYNETRGKVHFWWSLISFNVTFFPMHFLGLAGMPRRYADYP--MQFADFNAVASV 479
            ++  M +E  G+  FW   I FNVTF PMH  GL GMPRR   YP  M +   N +++V
Sbjct: 423 LFSRRMLSERLGRWVFWLIFIGFNVTFLPMHLTGLRGMPRRVWTYPGEMGWDTLNLISTV 482

Query: 480 GAFFFGFAQVYFFLFVVFPTMRGKGEKAAQKPWEGAEGLEW 520
           G +      + F + +      G G +  + PW GA  LEW
Sbjct: 483 GTYVLAVGVLVFLVDLAAKFRLGNGPQ--ENPW-GAGTLEW 520