Pairwise Alignments

Query, 604 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  361 bits (927), Expect = e-104
 Identities = 218/577 (37%), Positives = 312/577 (54%), Gaps = 20/577 (3%)

Query: 27  DLKYGPDFKAFDYVDPAAPKGGELRLVSNLRVSTFDKYNPFTIKGSAPAYLDSLLFDTLL 86
           + KY  +F  FDYV+P APK G+   V+   + T+D +N F  +G A A    L +D L+
Sbjct: 41  EAKYPENFTHFDYVNPQAPKYGK---VTFGELGTYDNFNRFASRGVAAANTAEL-YDPLM 96

Query: 87  TGSMDETASGYGLLAEDVTVAPDRRSVTFRLRPEARFHNGMPVEAADVKHSYDTLIGPYT 146
               DE  S Y L+A  +  + D   +   L P ARFH+G P+ A DV+ S++  +    
Sbjct: 97  FSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGV 156

Query: 147 SPGYKTLLQEVDGADVIDARTIRFRFKTPNRE-LPLIVGSLPIFSRAWGVENGKAKPFDQ 205
            P Y+   Q+V     I  RT+R   K PNRE L  +  S  +  + +      A+P ++
Sbjct: 157 -PQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNE 215

Query: 206 VVMDIPIGSGAYKIGPVRFGKDITYVRDPGYWARDLPVNRGSHNFDRITVKIYKDNTARL 265
                P+GSGAY+I   + G+ +TY  +P YWA+DLPVN G +NF +I    Y+D+T  L
Sbjct: 216 P----PVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVML 271

Query: 266 EALKAGEFDMMSFYSAGDWARRVNGKRFNTGELVKREFQHKKPAGFQSFVLNSRRDKLKD 325
           EA KAGEFD+     A  WA    G+ F+ G + K E  H+ PA  Q F+ N++R   +D
Sbjct: 272 EAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQD 331

Query: 326 PRVREALGLALDYEWMNRQMFYGGYPRVTDLFGNTDCEAKGLPSPEEKALLEPWRGKIPD 385
            RVREAL  ALD+EWMN+ +FY  Y R    F NT+ EA+GLP+  E A+L P++ ++P 
Sbjct: 332 VRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPA 391

Query: 386 ASFGPMYTPPTTEGEGHSLRNNLRRARDLLKEAGWEYRDGALRNAK-GERMTLEYLDSKE 444
             F   Y P  T+G G  +R  +R A  LLKEAGWE ++  + N K GE ++ E L    
Sbjct: 392 RVFTETYQPSVTDGSGR-IRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSP 450

Query: 445 GGVRTVSPWVRNLEKLGITLNFATVDFALYQERLDRFDFDITTINFPGTNNPGQSLLEIF 504
              R   P  +NL+ +GI +   TVD   Y +RL   DFD+ +  F     P  +LL ++
Sbjct: 451 TTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVW 510

Query: 505 GSKAAKTESSGNYMGVSTPAIDALLKDIVDADTKAELMPAC-RALDRVIMHSHYLIPQWT 563
            S     +SS N  G + P IDAL + I  +    E + A   ALDRV+  + Y+IPQW 
Sbjct: 511 NSN--YMDSSYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWH 568

Query: 564 LTSHRIVYDDWRLSFKSPMPPYAGGEDWVMGTWWAKQ 600
           L+ +R+   D + S  S +P Y+ G D    TWW  Q
Sbjct: 569 LSMYRVAMWD-KFSRPSVLPKYSLGLD----TWWIDQ 600