Pairwise Alignments

Query, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  400 bits (1027), Expect = e-116
 Identities = 192/358 (53%), Positives = 267/358 (74%), Gaps = 12/358 (3%)

Query: 1   VLSYVLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLA--EAKTAG---RGGGGGG-- 53
           +LSY+L+RLLL +PTL  ++ + F +IQ  PGGPVEQ +A  E  T+G   R  GGG   
Sbjct: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60

Query: 54  ---FESGGGSYRGNQGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSFFQNKD 110
               ++    Y+G++G+DP+ +E+I   +GFDKP HER +QML  +A F+ G+S F+  D
Sbjct: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120

Query: 111 VWTLILEKLPVSISLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFV 170
           V  LI+E+LPVSISLGLW+  + Y +++PLG++KA+  G+RFD+ S+ +V+IGYAIPGF+
Sbjct: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180

Query: 171 LGVALLVVF--GGQLQWFPLRGLTSANWDDLSWGARIVDYLWHITLPVTAMVLGSFAVTA 228
             + L+++F  G    WFPLRGL S N+  L W  +++DY WH+TLP  AMV+G FA  +
Sbjct: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLS 240

Query: 229 MLTKNAFLEEIRKQYVLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAFFAGSLL 288
           MLTKN+FL+EI KQYV+TARAKGL ER++L+KHVFRNA++ II G PSAFI  FF GS+L
Sbjct: 241 MLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSML 300

Query: 289 IETLFSLDGLGLLGYESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPRVKFE 346
           IE +FSL+G+GLLG+E+ I+RDYP+V  +LY+ TL+GL+  +ISDL Y+WVDPR+ FE
Sbjct: 301 IEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFE 358