Pairwise Alignments

Query, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  160 bits (405), Expect = 4e-44
 Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 41/346 (11%)

Query: 1   VLSYVLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLAEAKTAGRGGGGGGFESGGGS 60
           +L ++ KR+   IPT+L ++ ++F ++++ PG P                          
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP-------------------------- 34

Query: 61  YRGNQGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSF-FQNKDVWTLILEKL 119
           +   + + P+ +  I A YG DKP  E+    L    + D G SF +++  V  LI   L
Sbjct: 35  FSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASAL 94

Query: 120 PVSISLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFVLGVALLVVF 179
           PVS+ +GL  F  +  + V +G   A++  T  D       ++G  +P FVL   L+ +F
Sbjct: 95  PVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIF 154

Query: 180 GGQLQWFPLRGLTSANWDDLSWGARIVDYLWHITLPVTAMVLGSFAVTAMLTKNAFLEEI 239
             Q   FP  G     W D  +         ++ LPV  M L   A  A +T+ + +E +
Sbjct: 155 AIQFSLFPAGG-----WQDGGFE--------YMALPVLGMSLLYVATFARITRGSMIETL 201

Query: 240 RKQYVLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAFFAGSLLIETLFSLDGLG 299
              ++ TARAKGL    ++ KH  + AL+P+++ +  AF+G    GS++IET+F L G+G
Sbjct: 202 NSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVG-IITGSVVIETIFGLPGIG 260

Query: 300 LLGYESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPRVKF 345
            L   +   RDY +V+G   L   + ++   I D+   ++DP++++
Sbjct: 261 KLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306