Pairwise Alignments

Query, 411 a.a., RNA-2',3'-PO4:RNA-5'-OH ligase from Variovorax sp. SCN45

Subject, 480 a.a., RNA-splicing ligase RtcB from Methanococcus maripaludis S2

 Score =  158 bits (400), Expect = 3e-43
 Identities = 140/447 (31%), Positives = 206/447 (46%), Gaps = 69/447 (15%)

Query: 29  VEPEAQKQLENAARLPIVFKHIAAMPDVHYGIGATVGSVIPTFKA---IIPAAVGVDIGC 85
           ++ +  +Q+ N A LP + K+  AMPD HYG G  +G V    +    I P  VG DI C
Sbjct: 39  LQEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGGVGFDINC 98

Query: 86  GMMACKTTLHANDLPDNLGPLRSAIEKAVPHGSNPKRMGRDKGSWETPPNETDVAWAALK 145
           G+   KT L  ND+   L  L S I K VP G   K   R          E  V+WA  +
Sbjct: 99  GVRLVKTNLTKNDVTPKLKELLSEIFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWAVEE 158

Query: 146 D-----------EFDAICEDYPRLKNTNNHKH----LGTLGTGNHFIEV-----CLDEAG 185
           +           E   + E  P L + N  K     LG+LG+GNHF+EV       DE  
Sbjct: 159 EYGWERDIKHIEEHGKMKEADPTLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDEEA 218

Query: 186 SVWF---------MLHSGSRGVGNAVGTHFIELAKKDAELHQRNLPDQDLA----YFEEG 232
           +  F         M+H+GSRG+G+ +   ++   +  A+ +   LPD+ LA      EEG
Sbjct: 219 AKTFGVSPDQVVLMIHTGSRGLGHQICADYLRYMENAAKKYNIKLPDRQLACAPINSEEG 278

Query: 233 ARYFGDYVRAVGWAQKFARANREVM---MQRVVAAVRKVIVKPFEAHVEAVNCHHNYVSR 289
            +YF    +A+     +A ANR+++   ++    +V K   +  E  +   +  HN   +
Sbjct: 279 QKYF----KAMSCGANYAWANRQLITHWIRESFESVFKTSAEDLEMDI-IYDVAHNIAKK 333

Query: 290 ETHFGEDVL----VTRKGAVSA-------------KAGELGIIPGSMGAKSFIVRG--KG 330
           E H  + VL    V RKGA  A               G+  IIPG MG  S+++ G  K 
Sbjct: 334 EQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPGDMGTASYLMHGTEKA 393

Query: 331 NPESFMSCSHGAGRKMSRTKAKKLFT--IADQIAATEGVECRKDAD--VIDEIPMAYKDI 386
             ++F S +HGAGR +SR KA KL+T     +    +G+    D+   + +E P AYKDI
Sbjct: 394 MEQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILVMADSKGVIAEECPEAYKDI 453

Query: 387 DAVMEAQQD--LVEVVYTLKQVVCVKG 411
           + V +   D  +   V  +K +  VKG
Sbjct: 454 ENVADICHDSGISLKVAKMKPMGVVKG 480