Pairwise Alignments

Query, 540 a.a., Transcriptional regulatory protein RtcR from Variovorax sp. SCN45

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  143 bits (360), Expect = 2e-38
 Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 20/274 (7%)

Query: 186 TRNARFNALIDEIERVAVRSRAPILLVGPTGAGKSFLARRMFELKQSRHQMTGPFVEVNC 245
           T++ +  AL D++     ++ A ++++GP+G+GK  ++R +      +    GPF+ +NC
Sbjct: 136 TKSLKLLALADKV----AKTDANVMILGPSGSGKEVMSRYIHNASPRKE---GPFIAINC 188

Query: 246 ATLRGDGAASTLFGHRKGSFTGAAADRAGLLRTAHQGALFLDEIGELGLDEQAMLLKAIE 305
           A +  +   +TLFG+ KG+FTGA     G    A  G + LDEI E+ L+ QA LL+ ++
Sbjct: 189 AAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQ 248

Query: 306 EKRFFPVGADKEVESDFQLIAGTNRDLRSDVADGRFREDLFARINLWTYDLPGLAQRPED 365
           E+    +G+ K ++ D +++A +NRDL+  V  G FREDL+ R+N++    P L +R +D
Sbjct: 249 EREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDD 308

Query: 366 IEPNVDHLLAIHAAE-NHRVVRFNAEARAAYLRFAQSGEAVWSGNFRDLSASVTRLATLA 424
           IEP  +HL+  H  +    V      A    L +       W GN R+L   V R   L+
Sbjct: 309 IEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYP------WPGNVRELDNVVQRALILS 362

Query: 425 DGGRIPVALVEAEIARLRWL-WKHAGAVSPASAG 457
           + G I     ++E   L  + W  A ++  A AG
Sbjct: 363 ENGHI-----QSEHILLEGVDWHDASSLQQAVAG 391