Pairwise Alignments

Query, 463 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Variovorax sp. SCN45

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score = 87.0 bits (214), Expect = 2e-21
 Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 261 LEGNGMARVLAEPTLVALSGQSASFLAGGELPIPVPQGLGTIS------IEYKPFGIGLT 314
           +  +  + +L+ P++  +    ASF+ G E+P+      G+ +      ++ K  GI L 
Sbjct: 450 VSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLK 509

Query: 315 LTPTVLSNERIVLKVAPEASDLDYTNAITLNGVVVPAITTRRADTTVELGDGESFIIGGL 374
           + P +     + L +  E S     N +  NG V      R+ +T+V + DG+  ++GGL
Sbjct: 510 VVPQINEGNSVQLNIEQEVS-----NVLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGL 564

Query: 375 VSRTTTSNASKVPMLGDLPIIGTFFSKNNYQMNEKELVILVTPHLVK 421
           +      + SKVP+LGD+P++G  F   + Q+ +K L++ + P +++
Sbjct: 565 IDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611