Pairwise Alignments

Query, 463 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Variovorax sp. SCN45

Subject, 466 a.a., PilQ2 pilus assembly protein from Sinorhizobium meliloti 1021

 Score =  187 bits (476), Expect = 5e-52
 Identities = 137/411 (33%), Positives = 198/411 (48%), Gaps = 50/411 (12%)

Query: 38  VWPTASMAADAQAARPQPMQRPLILGAGTQQELLIEKGIDRMAIGDEAIATVA-ITRKAP 96
           V P AS   D+         R + +  G    +   +  D + IGD  IATV  +T ++ 
Sbjct: 24  VSPPASANGDSVEISSN-FSRSIKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTDRS- 81

Query: 97  NSAAARLIVTGKVAGRTSLMVW--EKGSTSAITYPV--EVRRPSSTVSGSMDSMTAHQVA 152
                   + G   G TS+ ++  EK     I   V  + +  SST+  S+   +    +
Sbjct: 82  ------FYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPGSSVKVTS 135

Query: 153 RDTALASNGEKADLI--------------DRSVVN----VRSNTVQVEVKVVEFNRSVLK 194
            +  +  +G   D +              D  V+N      S  VQ+ V+ VE NR V K
Sbjct: 136 ANGRIVLSGSATDAVAATQAEQIASRFAGDEEVINSIKITSSQQVQLNVRFVEINRDVGK 195

Query: 195 QAGLNIFSTRPNSSGFSFGVFSPSSLISSTFAANGQIAVQYNNPLTQAFDLLFNFSKAGI 254
           + G  I +    S+G      SP +  +                 T A  L+ +    G 
Sbjct: 196 ELGTQISAAYAWSNGSVEFNSSPRATSN-----------------TPAGSLIGSLIGEGY 238

Query: 255 GLNFGF--LEGNGMARVLAEPTLVALSGQSASFLAGGELPIPVPQGLGTISIEYKPFGIG 312
            ++     LE  GMAR LAEP L+A SG+++SFLAGGE PIP+ +  GTI++ YK FG+G
Sbjct: 239 SVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPISEQDGTITVSYKKFGVG 298

Query: 313 LTLTPTVLSNERIVLKVAPEASDLDYTNAITLNGVVVPAITTRRADTTVELGDGESFIIG 372
           L  TPTVLS+  I L + PE S +D T +  +  + +P  + RRA T+V+L  G+SF+I 
Sbjct: 299 LDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFMIA 358

Query: 373 GLVSRTTTSNASKVPMLGDLPIIGTFFSKNNYQMNEKELVILVTPHLVKPI 423
           GL+         +VP LG LPI+G  FS   YQ  E +LVI+VTPHLVKPI
Sbjct: 359 GLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPI 409