Pairwise Alignments

Query, 474 a.a., sigma-54-dependent transcriptional regulator from Variovorax sp. SCN45

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  192 bits (488), Expect = 2e-53
 Identities = 135/346 (39%), Positives = 182/346 (52%), Gaps = 34/346 (9%)

Query: 125 LRAREVAPQAP--DVLVAHSDAMKSLLAEVGAFADCDHSVLVRGETGVGKERIAQQLHLG 182
           LR R  A +AP    L+  S  MK L  ++G  A     V + GE+G GKE +A+ +H  
Sbjct: 139 LRLRAPATEAPVDSRLLGGSPPMKVLRKQIGKLARSQAPVYISGESGSGKELVARLIHEQ 198

Query: 183 HQHYSKGAFVAVNCGAIPDGLFESLFFGHTKGSFTGAVHAHRGYFEQATGGTLFLDEIGD 242
                K  FV VNCGAIP  L ES FFGH KGSF+GA+    G F+ A+GGTLFLDE+ D
Sbjct: 199 GPRAEK-TFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAASGGTLFLDEVAD 257

Query: 243 LPRYQQVKLLRVLEDNAVTRLGATAPIRVDFRLVAATNRNLREMVASGEFRADLFYRLAV 302
           LP   QVKLLR +++ AV  +G    + VD R++ AT+++L   VA+G FR DL+YRL V
Sbjct: 258 LPLPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLAAEVAAGRFRQDLYYRLNV 317

Query: 303 IELHVPSLEERGEVDKIAIFKAL--LSNVLGDELEALGETPHWLSDAVAETY-FPGNVRQ 359
           IEL VP L ER E  ++     L  L+   GD +  L    H  + A  E+Y FPGNVR+
Sbjct: 318 IELRVPPLRERREDIRLLADAMLRRLAQECGDSIAHL----HPEALAKLESYRFPGNVRE 373

Query: 360 LRNLAERVGVI--ARQLHSWDQNLIQRAIALTRGTPAPAISADRNGAGGGGGIGL---DG 414
           L N+ ER   +    ++ + D  L                 AD  G+   G   L   D 
Sbjct: 374 LENMLERAYTLCDGEEIKAGDLRL-----------------ADSPGSSENGEASLAQIDN 416

Query: 415 GSDRKGWNSGERNRIIAALEVNDWKRQDTAQHLGISRKVLWEKMRK 460
             D       ER  I+ ALE   W R   AQ LG++ + +  +++K
Sbjct: 417 LEDH--LEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKK 460