Pairwise Alignments

Query, 474 a.a., sigma-54-dependent transcriptional regulator from Variovorax sp. SCN45

Subject, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (475), Expect = 6e-52
 Identities = 152/460 (33%), Positives = 227/460 (49%), Gaps = 61/460 (13%)

Query: 29  MASFDVEVIRADGLPPPAPERGVAMRPSVAIISVTVIDGGGLAHATELLQGMPVIWVAAG 88
           +A FDV +  ADG    A     +    V+ + +   DG  L  A + +Q +  + +  G
Sbjct: 25  LAGFDVAMF-ADGASALAAIEQQSFAAVVSDVRLPDTDGLSLLVALKNVQSLMPVILITG 83

Query: 89  SRERDSRTYPPEYLHVLPYDFT-----CAELRTMVAKLVRQL--------RAREVAPQA- 134
             + D      + LH   +DF         L   VA+ V Q         RA  +A    
Sbjct: 84  HGDVDMAV---KALHQGAFDFIEKPFQPERLANTVAQAVSQYQNALSSQSRAHYLASAKG 140

Query: 135 -PDVLVAHSDAMKSLLAEVGAFADCDHSVLVRGETGVGKERIAQQLHLGHQHYSKGAFVA 193
              +L+    +++ L  ++   A  D +V++ GETG GKE +AQ LH   +   +G FVA
Sbjct: 141 LEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQCLHQASER-QRGQFVA 199

Query: 194 VNCGAIPDGLFESLFFGHTKGSFTGAVHAHRGYFEQATGGTLFLDEIGDLPRYQQVKLLR 253
           +NCGAIP+ LFES  FGH  G+FTGAV    G  E A  GTLFLDEI  +P   QVK+LR
Sbjct: 200 INCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDEIESMPLAMQVKVLR 259

Query: 254 VLEDNAVTRLGATAPIRVDFRLVAATNRNLREMVASGEFRADLFYRLAVIELHVPSLEER 313
           VL+D+ V R+G+  PI +D R++AA    LR+     EFR DLFYRL V +L++P L ER
Sbjct: 260 VLQDHVVERVGSNQPITIDLRVIAAAKEELRQ---HAEFRQDLFYRLNVAQLYLPPLRER 316

Query: 314 GEVDKIAIFKALLSNVLGDELEALGETPHWLSDAVAE-----TY-FPGNVRQLRNLAERV 367
           G+ D + +F+     V           P W S + A+     TY +PGNVR+LRN+A R 
Sbjct: 317 GD-DILLLFEHFCVQV----------KPTWRSLSEADRLALLTYRWPGNVRELRNVALR- 364

Query: 368 GVIARQLHSWDQNLIQRAIALTRGTPAPAISADRNGAGGGGGIGLDGGSDRKGWNSGERN 427
                  ++ D ++    I  +     P ++ +   AG    I +         ++ ER 
Sbjct: 365 -------YALDDSISVGEILAS----CPGMTEEEASAGLPLAIQV---------HNFERK 404

Query: 428 RIIAALEVNDWKRQDTAQHLGISRKVLWEKMRKYQILDGE 467
            I  AL  +     +  + L + R+ L +KM+K+ +L G+
Sbjct: 405 VIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGLLRGD 444