Pairwise Alignments

Query, 474 a.a., sigma-54-dependent transcriptional regulator from Variovorax sp. SCN45

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  196 bits (497), Expect = 2e-54
 Identities = 139/421 (33%), Positives = 211/421 (50%), Gaps = 19/421 (4%)

Query: 55  PSVAIISVTVIDGGGLAHATELLQGMP----VIWVAAGSRERDSRTYPPEYLHVLPYDFT 110
           P V +  + +    G+A   ++ Q  P    +I  A    +     Y       LP  F 
Sbjct: 48  PDVLVSDIRMPGMDGIALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFD 107

Query: 111 CAELRTMVAKLVRQLRAREVAPQAPDV------LVAHSDAMKSLLAEVGAFADCDHSVLV 164
             E  T+V + +   + +      P        ++  + AM+ +   +G  +    SVL+
Sbjct: 108 VDETLTLVERAIAHGQEQRKTSHRPSENYSAPEIIGEAPAMQEVFRAIGRLSRSSISVLI 167

Query: 165 RGETGVGKERIAQQLHLGHQHYSKGAFVAVNCGAIPDGLFESLFFGHTKGSFTGAVHAHR 224
            GE+G GKE +A  LH  H   ++  F+A+N  AIP  L ES  FGH KG+FTGA    +
Sbjct: 168 NGESGTGKELVAHALHR-HSPRAQKPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQ 226

Query: 225 GYFEQATGGTLFLDEIGDLPRYQQVKLLRVLEDNAVTRLGATAPIRVDFRLVAATNRNLR 284
           G FEQA GGTLFLDEIGD+P   Q +LLRVL D    R+G    I+VD R+VAAT++NL 
Sbjct: 227 GRFEQANGGTLFLDEIGDMPLDIQTRLLRVLADGQFYRVGGHVAIKVDVRIVAATHQNLE 286

Query: 285 EMVASGEFRADLFYRLAVIELHVPSL-EERGEVDKIA-IFKALLSNVLGDELEALGETPH 342
           ++V  G+FR DLF+RL VI +H+PSL E R +++K+   F AL +  LG E++ L     
Sbjct: 287 KLVHQGKFREDLFHRLNVIRIHIPSLRERRQDIEKLTKHFLALAAKELGVEMKTLNPR-- 344

Query: 343 WLSDAVAETYFPGNVRQLRNLAERVGVIARQLHSWDQNLIQRAIALTRGTPAP-AISADR 401
              D + +  +PGNVRQL N+   + V+A        +L    ++  + +     IS  +
Sbjct: 345 -TVDILTKLDWPGNVRQLENMCRWLTVMASGSEVLPSDLPSELLSERKASHFDNDISWQK 403

Query: 402 NGAGGGGGIGLDGGSDRKGWNSGERNRII--AALEVNDWKRQDTAQHLGISRKVLWEKMR 459
                       G ++   +   E  RI+  AAL   +  +Q+ A+ LG  R  L  K++
Sbjct: 404 QLETWAKSALASGETELLAYALPEFERILLEAALHHTNGHKQEAAKVLGWGRNTLTRKLK 463

Query: 460 K 460
           +
Sbjct: 464 E 464